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Genes Found in new Genomes |
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Figure 2. Percent of
full gene sets of nine reference eukaryote genomes found in new genomes
Daphnia pulex, Drosophila mojavensis, and reference genome Anopheles gambiae,
from DroSpeGe and wFleaBase genome analyses. The lower section shows total
number of protein genes for each reference genome, with the upper section the
percent of these found in new genomes. New genome D. mojavensis has 90%
similarity to the reference fruitfly D. melanogaster, and A. gambiae has 100%
similarity to itself. These are taken from tBLASTn analyses with a match
significance of 1e-10 or stronger.
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Genes Found Table |
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Species |
Fish |
Human |
Mouse |
Dmel |
Mosquito |
Bee |
Worm |
Yeast |
Weed |
Total |
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Dros.grimshawi |
14819 |
12357 |
10440 |
12188 |
10328 |
6466 |
7018 |
2320 |
8797 |
84733 |
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Dros.mojavensis |
14930 |
12434 |
10481 |
12276 |
10503 |
6519 |
7071 |
2330 |
8874 |
85418 |
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Daphnia |
15172 |
12429 |
10522 |
7965 |
8236 |
6018 |
6453 |
2244 |
8577 |
77616 |
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Mosquito |
15123 |
12534 |
10551 |
9920 |
14193 |
6571 |
7032 |
2355 |
9092 |
87371 |
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Total genes |
23524 |
22216 |
18941 |
13472 |
14364 |
9671 |
19765 |
5777 |
28860 |
156590 |
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Percent found of Total Genes in Genomes |
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Species |
Fish |
Human |
Mouse |
Fruitfly |
Mosquito |
Bee |
Worm |
Yeast |
Weed |
Average |
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Drosophila |
63.47 |
55.97 |
55.33 |
91.12 |
73.12 |
67.41 |
35.78 |
40.33 |
30.75 |
47.13 |
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Daphnia |
64.50 |
55.95 |
55.55 |
59.12 |
57.34 |
62.23 |
32.65 |
38.84 |
29.72 |
46.52 |
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Mosquito |
64.29 |
56.42 |
55.70 |
73.63 |
98.81 |
67.95 |
35.58 |
40.77 |
31.50 |
47.60 |
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Average |
64.08 |
56.11 |
55.53 |
74.63 |
76.42 |
65.86 |
34.67 |
39.98 |
30.66 |
47.08 |
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Daphnia averages
slightly fewer % found, excluding insects, than Dros, Mosquito. This may
well be an artifact due to assembly incompleteness. However Daphnia shows 50
- 100 more Fish genes than insects (compare mammal genes). This might be
eco-genetic rather than taxonomic or assembly artifact. Details of which
Fish genes are in Daphnia not in insects may validate this. |
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