#!/bin/bash
# run_evgomcltab.sh : should be part of run_evgomcl

date=20171114
idprefix=DAPHa_G
# idprefix=DIVa_G

#myspp for brief table
myspecies=dpx17evg

speciesmap=bemtab=Whitefly,dapmaevg14=Daphnia_magna,dpx17evg=Daphnia_pulex,dapgal16tsa=Daphnia_galeata,dapsim17evg=Daphnia_similoides,drosmel16nc=Fruitfly,tribcas16nc=Beetle,guppync1=Guppy,zebrafish3=Zebrafish,human=Human

# export clade=CrustInsectFish
export clade=DaphniaInsectFish

## mcl : used? fix path
# export MCL=/bio/bio-grid/mb/mcl9
# export evigene=/bio/bio-grid/mb/evigene
export MCL=$HOME/bio/mcl9
export evigene=$HOME/bio/evigene

env myspecies=$myspecies xml=0 date=$date clade=$clade speciesmap="$speciesmap" \
 $evigene/scripts/omcl/orthomcl_tabulate.pl -debug -idprefix=$idprefix -omclpath ./ -namepath ../names

#______________________
# daph10omcl.spplist
#   13901 bemtab
#   34529 dapgal16tsa
#   28116 dapmaevg14
#   38523 dapsim17evg
#   28496 dpx17evg
#   13916 drosmel16nc
#   22914 guppync1
#   39357 human
#   12861 tribcas16nc
#   26247 zebrafish3
#........
# arp8daph.spplist
#   13901 bemtab
#   29127 dapmaevg14
#   33040 dpx17evg
#   13916 drosmel16nc
#   22914 guppync1
#   12861 tribcas16nc
#   26247 zebrafish3
#..........