########################COMMAND######################
orthomcl_evg.pl --mode par_start --former_run_dir daph10_omcl --bpo=daph10omcla.bpo --gg=daph10omcla.gg

######################PARAMETERS#####################
            OrthoMCL Mode  parallel_start
          P-value Cut-off  1e-05     
 Percent Identity Cut-off  0         
    Percent Match Cut-off  0         
            MCL Inflation  1.5       
           Maximum Weight  316       
#######################SPECIES########################
                   bemtab  13901 genes         
              dapgal16tsa  34529 genes         
               dapmaevg14  28116 genes         
              dapsim17evg  38523 genes         
                 dpx17evg  28496 genes         
              drosmel16nc  13916 genes         
                 guppync1  22914 genes         
                    human  39357 genes         
              tribcas16nc  12861 genes         
               zebrafish3  26247 genes         
########################FILES########################
              all_fa_file  N/A                                               
         genome_gene_file  daph10omcla.gg                                    
               blast_file  N/A                                               
     blast_parse_out_file  daph10omcla.bpo                                   
             bpo_idx_file  daph10omcla_bpo.idx                               
              bpo_se_file  daph10omcla_bpo.se                                
              matrix_file  /home/ux455375/scratchn/chrs/aabugs/crusts/daphplx/aaeval/omcldap/daph10_omcl//tmp/all_ortho.mtx
               index_file  /home/ux455375/scratchn/chrs/aabugs/crusts/daphplx/aaeval/omcldap/daph10_omcl//tmp/all_ortho.idx
                 mcl_file  /home/ux455375/scratchn/chrs/aabugs/crusts/daphplx/aaeval/omcldap/daph10_omcl//tmp/all_ortho.mcl
              mcl_bi_file  /home/ux455375/scratchn/chrs/aabugs/crusts/daphplx/aaeval/omcldap/daph10_omcl//all_orthomcl.out
       parameter_log_file  /home/ux455375/scratchn/chrs/aabugs/crusts/daphplx/aaeval/omcldap/daph10_omcl//parameter.log

######################START TIME#####################
Tue Nov 14 05:37:45 PST 2017

########################END TIME#####################
Tue Nov 14 06:00:51 PST 2017