scaffold_101	NCBI_GNO	mRNA	72537	73397	38.7521	+	.	ID=NCBI_GNO_418644;Parent=gene418644;flags=Start,Stop;paralog=Omcl3,90;jgi=DappuDraft_112865;tilex=26404;ltr_region=Gypsy_1
scaffold_1017	NCBI_GNO	mRNA	6086	10682	90.5273	-	.	ID=NCBI_GNO_77204;Parent=gene77204;flags=Start,Stop;tandy=td_s7c1g0;jgiov=DappuDraft_300564;tilex=30115;estov=WFes0038771,WFes0038988,WFes0038989,WFes0149039,WFes0156063,WFes0156064;est_group=biotic:Fish_predation-juvenile,metal:High_mixed_metals,metal:Low_mixed_metals;ltr_region=Copia_1
scaffold_102	NCBI_GNO	mRNA	224424	225851	25.3511	-	.	ID=NCBI_GNO_60654;Parent=gene60654;flags=Start,Stop;paralog=Omcl253,10;jgiov=DappuDraft_257448;tilex=38636;modpr=S000006031;ltr_region=Gypsy_2
scaffold_102	NCBI_GNO	mRNA	226052	227128	26.7483	-	.	ID=NCBI_GNO_62654;Parent=gene62654;flags=Start,Stop;paralog=Omcl60,27;jgiov=DappuDraft_112961;tilex=20133;ltr_region=Gypsy_2
scaffold_102	NCBI_GNO	mRNA	230880	233558	56.9506	-	.	ID=NCBI_GNO_64654;Parent=gene64654;flags=Start,Stop;paralog=Omcl33,36;jgiov=DappuDraft_112962;modpr=WB:WBGene00019071;ltr_region=Gypsy_2
scaffold_102	NCBI_GNO	mRNA	311651	397914	101.109	+	.	ID=NCBI_GNO_114654;Parent=gene114654;flags=Start,Stop;tandy=td_s2c12g0;paralog=Omcl19,53;jgiov=DappuDraft_112976,DappuDraft_112977,DappuDraft_257469,DappuDraft_257475,DappuDraft_257476,DappuDraft_257479;tilex=37950;ltr_region=Copia_2
scaffold_103	NCBI_GNO	mRNA	127111	127885	51.0043	+	.	ID=NCBI_GNO_182654;Parent=gene182654;flags=Start,Stop;paralog=Omcl272,10;jgi=DappuDraft_328458;tilex=14074;ltr_region=Gypsy_1
scaffold_103	NCBI_GNO	mRNA	128609	129466	37.4799	-	.	ID=NCBI_GNO_184654;Parent=gene184654;flags=Start,Stop;tandy=td_s3c14g1;paralog=Omcl3,90;jgiov=DappuDraft_113000;ltr_region=Gypsy_1
scaffold_103	NCBI_GNO	mRNA	200072	214710	59.7399	+	.	ID=NCBI_GNO_216654;Parent=gene216654;flags=Start,Stop;tandy=td_s3c19g0;paralog=Omcl172,14;jgiov=DappuDraft_257543,DappuDraft_257544;tilex=41076;ltr_region=Copia_3
scaffold_104	NCBI_GNO	mRNA	165540	169170	81.0506	-	.	ID=NCBI_GNO_328654;Parent=gene328654;Dbxref=CAA69272.1,WFes0178176,WFes0178177;flags=EST,Prot,Start,Stop,Frameshifts;maxCDS=165540 169170;protCDS=166759 168093;protein_hit=gi|1769898|emb|CAA69272.1|;tandy=td_s4c8g0;paralog=Omcl216,12;jgiov=DappuDraft_257646;tilex=12852;est_group=other:CBTX;ltr_region=Copia_4
scaffold_104	NCBI_GNO	mRNA	168958	169200	16.253	-	.	ID=NCBI_GNO_330654;Parent=gene330654;flags=Start,Stop;jgi=DappuDraft_257646;tilex=2202;ltr_region=Copia_4
scaffold_104	NCBI_GNO	mRNA	170131	170464	34.1847	-	.	ID=NCBI_GNO_332654;Parent=gene332654;flags=Start,Stop;tandy=td_s4c8g1;jgi=DappuDraft_328528;tilex=5480;ltr_region=Copia_4
scaffold_104	NCBI_GNO	mRNA	202052	206982	58.6799	+	.	ID=NCBI_GNO_350654;Parent=gene350654;flags=Start,Stop;paralog=Omcl2387,2;jgi=DappuDraft_113063;tilex=18331;ltr_region=Bel_1
scaffold_104	NCBI_GNO	mRNA	277624	278768	53.6942	-	.	ID=NCBI_GNO_362654;Parent=gene362654;flags=Start,Stop;tandy=td_s4c15g0;paralog=Omcl10,66;jgiov=DappuDraft_61713;ltr_region=Bel_2
scaffold_105	NCBI_GNO	mRNA	2996	3361	19.0446	+	.	ID=NCBI_GNO_4664;Parent=gene4664;flags=Start,Stop;jgi=DappuDraft_257719;tilex=2772;ltr_region=Gypsy_4
scaffold_105	NCBI_GNO	mRNA	3461	20764	39.8197	+	.	ID=NCBI_GNO_6664;Parent=gene6664;flags=Start,Stop;tandy=td_s5c2g0;jgiov=DappuDraft_257720,DappuDraft_257723;tilex=34782;ltr_region=Gypsy_4
scaffold_105	NCBI_GNO	mRNA	333561	334844	53.1216	+	.	ID=NCBI_GNO_72664;Parent=gene72664;flags=Start,Stop;paralog=Omcl71,26;jgiov=DappuDraft_113138;tilex=16563;ltr_region=Gypsy_5
scaffold_105	NCBI_GNO	mRNA	334925	335487	30.8331	+	.	ID=NCBI_GNO_74664;Parent=gene74664;flags=Start,Stop;paralog=Omcl1080,3;jgiov=DappuDraft_113139;ltr_region=Gypsy_5
scaffold_105	NCBI_GNO	mRNA	337774	338277	17.7156	+	.	ID=NCBI_GNO_76664;Parent=gene76664;flags=Start,Stop;tandy=td_s5c33g1;paralog=Omcl1077,3;jgiov=DappuDraft_113139;tilex=18036;ltr_region=Gypsy_5
scaffold_105	NCBI_GNO	mRNA	374953	380237	129.601	+	.	ID=NCBI_GNO_90664;Parent=gene90664;Dbxref=WFes0120163;flags=EST,Start,Stop;maxCDS=374953 380237;tandy=td_s5c38g0;paralog=Omcl1000,3;jgiov=DappuDraft_299709;tilex=31012;estov=WFes0006218,WFes0008080,WFes0009636;modpr=FB:CG31148,FB:CG31414,MGI:95665,WB:WBGene00008706,WB:WBGene00016340,WB:WBGene00021160;est_group=metal:Low_copper;ltr_region=Bel_3
scaffold_105	NCBI_GNO	mRNA	380507	394877	76.9904	+	.	ID=NCBI_GNO_92664;Parent=gene92664;Dbxref=AAN15747.1;flags=Prot,Start,Stop;protCDS=392241 394844;tandy=td_s5c38g1;paralog=Omcl5,86;jgiov=DappuDraft_13307,DappuDraft_14855,DappuDraft_257793,DappuDraft_257795,DappuDraft_257796;Note=Q7T271_PAROL/Q7T271/Paralichthys olivaceus/Reverse transcriptase-like protein;Ontology_term=GO:0003723/F:RNA binding,GO:0003964/F:RNA-directed DNA polymerase activity,GO:0006278/P:RNA-dependent DNA replication,Pfam:PF03372/Exo_endo_phos,Pfam:PF00078/RVT_1;tilex=23117;modpr=WB:WBGene00019694,WB:WBGene00019990,WB:WBGene00020074;ltr_region=Bel_3
scaffold_107	NCBI_GNO	mRNA	260580	270616	70.7486	+	.	ID=NCBI_GNO_260664;Parent=gene260664;flags=Start,Stop;tandy=td_s7c3g1;paralog=Omcl118,19;jgi=DappuDraft_328699;tilex=38375;ltr_region=Bel_4
scaffold_108	NCBI_GNO	mRNA	184204	189292	46.0986	-	.	ID=NCBI_GNO_48674;Parent=gene48674;flags=Start,Stop;tandy=td_s8c18g1;paralog=Omcl102,21;jgiov=DappuDraft_113293;tilex=42273;ltr_region=Gypsy_6
scaffold_108	NCBI_GNO	mRNA	393464	395125	34.6575	-	.	ID=NCBI_GNO_96674;Parent=gene96674;flags=Start,Stop;tandy=td_s8c30g0;paralog=Omcl449,6;jgiov=DappuDraft_258058;tilex=12184;ltr_region=Gypsy_7
scaffold_108	NCBI_GNO	mRNA	395186	395380	22.2761	-	.	ID=NCBI_GNO_98674;Parent=gene98674;flags=Start,Stop;jgi=DappuDraft_328769;tilex=20974;ltr_region=Gypsy_7
scaffold_108	NCBI_GNO	mRNA	395595	396107	21.6649	-	.	ID=NCBI_GNO_100674;Parent=gene100674;flags=Start,Stop;paralog=Omcl1,95;jgiov=DappuDraft_113329;tilex=13380;ltr_region=Gypsy_7
scaffold_108	NCBI_GNO	mRNA	397778	398275	20.7823	-	.	ID=NCBI_GNO_102674;Parent=gene102674;flags=Start,Stop;paralog=Omcl431,6;jgiov=DappuDraft_113329;ltr_region=Gypsy_7
scaffold_108	NCBI_GNO	mRNA	401653	402210	19.2108	-	.	ID=NCBI_GNO_104674;Parent=gene104674;flags=Start,Stop;paralog=Omcl82,24;jgi=DappuDraft_328772;ltr_region=Gypsy_7
scaffold_109	NCBI_GNO	mRNA	408432	409151	24.4862	-	.	ID=NCBI_GNO_228674;Parent=gene228674;flags=Start,Stop;paralog=Omcl733,4;jgi=DappuDraft_113389;tilex=18781;ltr_region=Bel_6
scaffold_112	NCBI_GNO	mRNA	171388	177678	96.4481	-	.	ID=NCBI_GNO_160684;Parent=gene160684;flags=Start,Stop;tandy=td_s2c4g0;jgi=DappuDraft_328960;tilex=19347;ltr_region=Copia_7
scaffold_112	NCBI_GNO	mRNA	178023	179378	39.8224	-	.	ID=NCBI_GNO_162684;Parent=gene162684;flags=Start,Stop;tandy=td_s2c4g0;jgi=DappuDraft_113528;tilex=4892;ltr_region=Copia_7
scaffold_112	NCBI_GNO	mRNA	285681	286862	23.4203	+	.	ID=NCBI_GNO_200684;Parent=gene200684;flags=Start,Stop;paralog=Omcl3,90;jgi=DappuDraft_328980;tilex=15119;modpr=MGI:96705,S000002557;ltr_region=Gypsy_8
scaffold_112	NCBI_GNO	mRNA	286899	291148	97.1704	+	.	ID=NCBI_GNO_202684;Parent=gene202684;Dbxref=CAH67121.1;flags=Prot,Start,Stop;protCDS=288276 290599;tandy=td_s2c13g0;paralog=Omcl3,90;jgiov=DappuDraft_258399,DappuDraft_258400;Note=Q01JF4_ORYSA/Q01JF4/Oryza sativa/H0502G05.12 protein;Ontology_term=GO:0000785/C:chromatin,GO:0005634/C:nucleus,GO:0004190/F:aspartic-type endopeptidase activity,GO:0003682/F:chromatin binding,GO:0003677/F:DNA binding,GO:0003723/F:RNA binding,GO:0003964/F:RNA-directed DNA polymerase activity,GO:0008270/F:zinc ion binding,GO:0006333/P:chromatin assembly or disassembly,GO:0015074/P:DNA integration,GO:0006508/P:proteolysis,GO:0006278/P:RNA-dependent DNA replication,Pfam:PF00385/Chromo,Pfam:PF03732/Retrotrans_gag,Pfam:PF00665/rve,Pfam:PF08284/RVP_2,Pfam:PF00078/RVT_1,Pfam:PF00098/zf-CCHC;tilex=29732;ltr_region=Gypsy_8
scaffold_1125	NCBI_GNO	mRNA	2140	11420	60.5148	+	.	ID=NCBI_GNO_1224;Parent=gene1224;Dbxref=AAM18076.1;flags=Prot,Start,Stop;protCDS=11125 11366;tandy=td_s5c1g0;paralog=Omcl714,4;jgiov=DappuDraft_120054,DappuDraft_67864;Note=Q8T5Q7_BRABE/Q8T5Q7/Branchiostoma belcheri tsingtauense/Peroxiredoxin V protein;Ontology_term=Pfam:PF08534/Redoxin;tilex=28205;ltr_region=Bel_7
scaffold_115	NCBI_GNO	mRNA	40971	53344	47.4315	-	.	ID=NCBI_GNO_176694;Parent=gene176694;flags=Start,Stop;paralog=Omcl239,11;jgiov=DappuDraft_258624,DappuDraft_258628;tilex=32000;ltr_region=Bel_8
scaffold_115	NCBI_GNO	mRNA	263909	268204	82.9521	-	.	ID=NCBI_GNO_248694;Parent=gene248694;flags=Start,Stop;tandy=td_s5c5g0;paralog=Omcl44,31;tilex=13074;estov=WFes0110028,WFes0110029,WFes0158219,WFes0158220;modpr=FB:CG11606;est_group=metal:Low_m_arsenic_III,normal:Males-adult;ltr_region=Copia_9
scaffold_115	NCBI_GNO	mRNA	294811	295689	52.1704	+	.	ID=NCBI_GNO_266694;Parent=gene266694;flags=Start,Stop;jgiov=DappuDraft_258681;tilex=17209;ltr_region=Copia_10
scaffold_115	NCBI_GNO	mRNA	301103	301528	26.2473	-	.	ID=NCBI_GNO_268694;Parent=gene268694;flags=Start,Stop;jgi=DappuDraft_329167;tilex=12359;ltr_region=Copia_10
scaffold_116	NCBI_GNO	mRNA	192924	193210	24.1169	+	.	ID=NCBI_GNO_382694;Parent=gene382694;flags=Start,Stop;ltr_region=Gypsy_9
scaffold_118	NCBI_GNO	mRNA	82306	89284	93.7243	+	.	ID=NCBI_GNO_138704;Parent=gene138704;flags=Start,Stop;paralog=Omcl1646,2;jgi=DappuDraft_329330;tilex=24017;ltr_region=Copia_11
scaffold_1184	NCBI_GNO	mRNA	9176	9606	34.185	-	.	ID=NCBI_GNO_255224;Parent=gene255224;flags=Start,Stop;tandy=td_s4c1g1;tilex=15977;ltr_region=Bel_9
scaffold_119	NCBI_GNO	mRNA	53472	78569	66.0433	-	.	ID=NCBI_GNO_252704;Parent=gene252704;flags=Start,Stop;tandy=td_s9c4g0;jgi=DappuDraft_329389;tilex=27586;ltr_region=Copia_12
scaffold_119	NCBI_GNO	mRNA	160009	165448	44.207	-	.	ID=NCBI_GNO_262704;Parent=gene262704;Dbxref=NP_504187.1;flags=Prot,Start,Stop;protCDS=160204 161256;tandy=td_s9c11g0;paralog=Omcl161,15;Note=O17517_CAEEL/O17517/Caenorhabditis elegans/Putative uncharacterized protein;Ontology_term=Pfam:PF05380/Peptidase_A17;tilex=4890;modpr=WB:WBGene00017187;ltr_region=Bel_10
scaffold_119	NCBI_GNO	mRNA	165883	167124	60.5699	+	.	ID=NCBI_GNO_264704;Parent=gene264704;flags=Start,Stop;paralog=Omcl973,3;jgi=DappuDraft_329398;tilex=10943;ltr_region=Bel_10
scaffold_12	NCBI_GNO	mRNA	2063838	2080874	265.439	-	.	ID=NCBI_GNO_684124;Parent=gene684124;Dbxref=BAF03554.1,NP_001017963.1,NP_005339.2,NP_031381.2,NP_032328.2,NP_034610.1,NP_506626.1,NP_523899.1;flags=Prot,Start,Stop,Frameshifts;protCDS=2064675 2066288;pstop=2064828 2064830,2065599 2065601,2065662 2065664,2066076 2066078;tandy=td_s2c250g0;paralog=Omcl23,44;jgiov=DappuDraft_238988,DappuDraft_238989,DappuDraft_47091,DappuDraft_99736;Note=Q0KKB5_MAMBR/Q0KKB5/Mamestra brassicae/Heat shock protein 90;Ontology_term=GO:0005524/F:ATP binding,GO:0051082/F:unfolded protein binding,GO:0006457/P:protein folding,GO:0006986/P:response to unfolded protein,Pfam:PF02518/HATPase_c,Pfam:PF00183/HSP90;tilex=47535;estov=WFes0107902,WFes0107903;est_group=normal:Males-adult;ltr_region=Gypsy_3
scaffold_126	NCBI_GNO	mRNA	198890	209195	32.6334	-	.	ID=NCBI_GNO_52734;Parent=gene52734;flags=Start,Stop;tandy=td_s6c9g1;jgi=DappuDraft_329751;tilex=30378;estov=WFes0119039,WFes0158542,WFes0158543;est_group=metal:Low_copper,metal:Low_m_arsenic_III;ltr_region=Gypsy_3
scaffold_126	NCBI_GNO	mRNA	284528	285112	30.9994	+	.	ID=NCBI_GNO_82734;Parent=gene82734;flags=Start,Stop;tandy=td_s6c14g0;jgiov=DappuDraft_259636;tilex=7824;ltr_region=Gypsy_13
scaffold_126	NCBI_GNO	mRNA	285638	290407	59.4003	+	.	ID=NCBI_GNO_84734;Parent=gene84734;flags=Start,Stop;tandy=td_s6c15g0;paralog=Omcl102,21;jgi=DappuDraft_329767;tilex=24745;ltr_region=Gypsy_13
scaffold_128	NCBI_GNO	mRNA	175709	176113	19.7975	+	.	ID=NCBI_GNO_250734;Parent=gene250734;flags=Start,Stop;tandy=td_s8c18g1;paralog=Omcl139,17;jgi=DappuDraft_114317;tilex=3801;ltr_region=Gypsy_14
scaffold_130	NCBI_GNO	mRNA	13411	13893	21.3601	-	.	ID=NCBI_GNO_8744;Parent=gene8744;flags=Start,Stop;paralog=Omcl139,17;jgi=DappuDraft_329931;ltr_region=Gypsy_15
scaffold_130	NCBI_GNO	mRNA	15935	17605	56.2924	-	.	ID=NCBI_GNO_10744;Parent=gene10744;flags=Start,Stop;paralog=Omcl139,17;tilex=18540;ltr_region=Gypsy_15
scaffold_136	NCBI_GNO	mRNA	48591	119670	63.7546	+	.	ID=NCBI_GNO_216754;Parent=gene216754;Dbxref=WFes0108731;flags=EST,Start,Stop;maxCDS=48591 119670;tandy=td_s6c1g0;jgiov=DappuDraft_114663,DappuDraft_114664,DappuDraft_260283,DappuDraft_260288,DappuDraft_260289,DappuDraft_260293;tilex=44090;est_group=normal:Males-adult;ltr_region=Copia_13
scaffold_136	NCBI_GNO	mRNA	187192	197421	75.7058	-	.	ID=NCBI_GNO_226754;Parent=gene226754;Dbxref=ABE89518.1;flags=Prot,Start,Stop;protCDS=196387 197010;tandy=td_s6c19g0;paralog=Omcl328,8;Note=Q1S9K1_MEDTR/Q1S9K1/Medicago truncatula/Integrase, catalytic region,Zinc finger, CCHC-type,Peptidase aspartic, catalytic;Ontology_term=GO:0003677/F:DNA binding,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve,Pfam:PF00098/zf-CCHC;tilex=18087;ltr_region=Copia_14
scaffold_137	NCBI_GNO	mRNA	9497	39248	129.869	-	.	ID=NCBI_GNO_258754;Parent=gene258754;flags=Start,Stop;tandy=td_s7c1g0;paralog=Omcl1203,3;jgiov=DappuDraft_114702,DappuDraft_260349;tilex=28608;ltr_region=Gypsy_18
scaffold_14	NCBI_GNO	mRNA	283854	285143	59.6411	+	.	ID=NCBI_GNO_208144;Parent=gene208144;flags=Start,Stop;paralog=Omcl615,5;jgi=DappuDraft_239528;tilex=13199;ltr_region=Bel_14
scaffold_14	NCBI_GNO	mRNA	290809	292232	69.0965	-	.	ID=NCBI_GNO_210144;Parent=gene210144;flags=Start,Stop;tandy=td_s4c22g0;paralog=Omcl10,66;jgi=DappuDraft_315374;ltr_region=Bel_14
scaffold_14	NCBI_GNO	mRNA	608077	608511	24.8796	+	.	ID=NCBI_GNO_304144;Parent=gene304144;flags=Start,Stop;paralog=Omcl3,90;jgi=DappuDraft_315423;ltr_region=Gypsy_8
scaffold_14	NCBI_GNO	mRNA	613712	614485	37.1909	+	.	ID=NCBI_GNO_306144;Parent=gene306144;flags=Start,Stop;paralog=Omcl288,9;jgi=DappuDraft_315424;tilex=36639;ltr_region=Gypsy_8
scaffold_140	NCBI_GNO	mRNA	134883	135573	55.5242	-	.	ID=NCBI_GNO_230764;Parent=gene230764;flags=Start,Stop;tandy=td_scaffold_140c20g0;jgi=DappuDraft_260581;tilex=3826;estov=WFes0039489;est_group=biotic:Fish_predation-juvenile;ltr_region=Gypsy_16
scaffold_140	NCBI_GNO	mRNA	136065	148522	83.1918	+	.	ID=NCBI_GNO_232764;Parent=gene232764;Dbxref=AAM12303.1;flags=Prot,Start,Stop;protCDS=138593 139660;tandy=td_scaffold_140c20g1;paralog=Omcl21,46;jgiov=DappuDraft_260582,DappuDraft_260583,DappuDraft_260584,DappuDraft_260586;Note=Q8S6Z2_ORYSJ/Q8S6Z2/Oryza sativa subsp. japonica/Putative polyprotein;Ontology_term=GO:0004190/F:aspartic-type endopeptidase activity,GO:0003677/F:DNA binding,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,GO:0006508/P:proteolysis,Pfam:PF03732/Retrotrans_gag,Pfam:PF00665/rve,Pfam:PF08284/RVP_2,Pfam:PF00078/RVT_1,Pfam:PF00098/zf-CCHC;tilex=47076;modpr=WB:WBGene00000637;ltr_region=Gypsy_16
scaffold_140	NCBI_GNO	mRNA	164443	181546	60.8485	+	.	ID=NCBI_GNO_242764;Parent=gene242764;flags=Start,Stop;tandy=td_scaffold_140c22g1;paralog=Omcl733,4;jgi=DappuDraft_330414;tilex=15855;modpr=WB:WBGene00012505;ltr_region=Bel_6
scaffold_141	NCBI_GNO	mRNA	75600	90854	107.935	-	.	ID=NCBI_GNO_324764;Parent=gene324764;flags=Start,Stop;tandy=td_s1c4g1;paralog=Omcl33,36;jgi=DappuDraft_330455;tilex=21753;ltr_region=Gypsy_2
scaffold_141	NCBI_GNO	mRNA	230442	239628	31.4822	-	.	ID=NCBI_GNO_366764;Parent=gene366764;Dbxref=NP_001052201.1;flags=Prot,Start,Stop;protCDS=235633 237144;pstop=236587 236589;tandy=td_s1c10g0;paralog=Omcl48,29;jgiov=DappuDraft_114910,DappuDraft_114911;Note=Q7XSK7_ORYSJ/Q7XSK7/Oryza sativa subsp. japonica/OSJNBa0059D20.8 protein,Os04g0191000 protein;Ontology_term=GO:0000785/C:chromatin,GO:0005634/C:nucleus,GO:0003682/F:chromatin binding,GO:0003677/F:DNA binding,GO:0003723/F:RNA binding,GO:0003964/F:RNA-directed DNA polymerase activity,GO:0006333/P:chromatin assembly or disassembly,GO:0015074/P:DNA integration,GO:0006278/P:RNA-dependent DNA replication,Pfam:PF00385/Chromo,Pfam:PF03732/Retrotrans_gag,Pfam:PF00665/rve,Pfam:PF00078/RVT_1;tilex=20422;modpr=MGI:2182036;ltr_region=Gypsy_19
scaffold_143	NCBI_GNO	mRNA	142814	143604	37.2095	-	.	ID=NCBI_GNO_170774;Parent=gene170774;flags=Start,Stop;tandy=td_s3c7g0;paralog=Omcl10,66;jgi=DappuDraft_330557;tilex=14359;ltr_region=Bel_12
scaffold_143	NCBI_GNO	mRNA	143746	144237	42.7516	-	.	ID=NCBI_GNO_172774;Parent=gene172774;flags=Start,Stop;tandy=td_s3c7g0;paralog=Omcl10,66;jgi=DappuDraft_260803;tilex=9774;ltr_region=Bel_12
scaffold_144	NCBI_GNO	mRNA	120529	136233	73.3399	-	.	ID=NCBI_GNO_222774;Parent=gene222774;flags=Start,Stop;tandy=td_s4c10g1;paralog=Omcl1069,3;jgi=DappuDraft_330588;tilex=32268;ltr_region=Bel_9
scaffold_146	NCBI_GNO	mRNA	20869	21333	16.2914	-	.	ID=NCBI_GNO_14784;Parent=gene14784;flags=Start,Stop;paralog=Omcl71,26;jgi=DappuDraft_115134;tilex=11174;ltr_region=Gypsy_21
scaffold_146	NCBI_GNO	mRNA	23740	25817	63.1168	-	.	ID=NCBI_GNO_16784;Parent=gene16784;flags=Start,Stop;tandy=td_s6c2g0;paralog=Omcl13,61;jgi=DappuDraft_330691;ltr_region=Gypsy_21
scaffold_146	NCBI_GNO	mRNA	29098	29526	20.013	-	.	ID=NCBI_GNO_18784;Parent=gene18784;flags=Start,Stop;paralog=Omcl71,26;jgi=DappuDraft_330692;tilex=10354;ltr_region=Gypsy_21
scaffold_146	NCBI_GNO	mRNA	29610	30394	28.543	-	.	ID=NCBI_GNO_20784;Parent=gene20784;flags=Start,Stop;paralog=Omcl1153,3;jgi=DappuDraft_330693;tilex=8403;ltr_region=Gypsy_21
scaffold_146	NCBI_GNO	mRNA	30952	31323	17.5572	-	.	ID=NCBI_GNO_22784;Parent=gene22784;flags=Start,Stop;paralog=Omcl1968,2;jgi=DappuDraft_330694;tilex=8624;ltr_region=Gypsy_21
scaffold_146	NCBI_GNO	mRNA	223772	230015	81.3705	-	.	ID=NCBI_GNO_74784;Parent=gene74784;flags=Start,Stop;paralog=Omcl44,31;jgiov=DappuDraft_261045,DappuDraft_261047;tilex=18295;ltr_region=Copia_16
scaffold_147	NCBI_GNO	mRNA	3784	7916	65.3835	+	.	ID=NCBI_GNO_104784;Parent=gene104784;flags=Start,Stop;paralog=Omcl13,61;jgi=DappuDraft_330734;tilex=7021;ltr_region=N153
scaffold_147	NCBI_GNO	mRNA	96014	96490	31.6231	+	.	ID=NCBI_GNO_126784;Parent=gene126784;flags=Start,Stop;paralog=Omcl1557,2;jgi=DappuDraft_115185;tilex=5630;ltr_region=Bel_1
scaffold_147	NCBI_GNO	mRNA	96688	101994	47.518	+	.	ID=NCBI_GNO_128784;Parent=gene128784;Dbxref=AAN87269.1;flags=Prot,Start,Stop;protCDS=98881 101655;tandy=td_s7c5g0;paralog=Omcl161,15;Note=Q8I7Q1_DROME/Q8I7Q1/Drosophila melanogaster/ORF;Ontology_term=GO:0004190/F:aspartic-type endopeptidase activity,GO:0003677/F:DNA binding,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,GO:0006508/P:proteolysis,Pfam:PF03564/DUF1759,Pfam:PF05380/Peptidase_A17,Pfam:PF00665/rve,Pfam:PF09337/zf-H2C2;tilex=24160;modpr=WB:WBGene00008864,WB:WBGene00011455,WB:WBGene00013663,WB:WBGene00017187,WB:WBGene00017206,WB:WBGene00019446,WB:WBGene00020514,WB:WBGene00022294,WB:WBGene00022524;ltr_region=Bel_1
scaffold_147	NCBI_GNO	mRNA	118485	141198	97.3674	-	.	ID=NCBI_GNO_136784;Parent=gene136784;Dbxref=AAI09203.1;flags=Prot,Start,Stop;protCDS=119195 120046;tandy=td_s7c8g0;paralog=Omcl339,8;jgiov=DappuDraft_115188,DappuDraft_115190,DappuDraft_261094,DappuDraft_261097,DappuDraft_261101,DappuDraft_261107,DappuDraft_63746;Note=Q32MC2_HUMAN/Q32MC2/Homo sapiens/Jerky homolog-like,Mouse;Ontology_term=GO:0005634/C:nucleus,GO:0003677/F:DNA binding,GO:0045449/P:regulation of transcription,Pfam:PF04218/CENP-B_N,Pfam:PF09091/CenpB-DNA-bind,Pfam:PF03184/DDE;tilex=42892;modpr=MGI:1915390,MGI:2685264;ltr_region=Bel_13
scaffold_151	NCBI_GNO	mRNA	251600	252903	54.3449	-	.	ID=NCBI_GNO_102794;Parent=gene102794;flags=Start,Stop;tandy=td_s1c18g0;paralog=Omcl10,66;jgi=DappuDraft_330899,DappuDraft_63808;tilex=15257;modpr=MGI:106095;ltr_region=Bel_2
scaffold_152	NCBI_GNO	mRNA	165300	229863	51.4432	-	.	ID=NCBI_GNO_164794;Parent=gene164794;flags=Start,Stop;tandy=td_s2c12g0;paralog=Omcl33,36;jgiov=DappuDraft_115339,DappuDraft_261451,DappuDraft_30205;tilex=28617;ltr_region=Gypsy_5
scaffold_152	NCBI_GNO	mRNA	230514	231458	31.2231	-	.	ID=NCBI_GNO_166794;Parent=gene166794;flags=Start,Stop;tandy=td_s2c16g0;paralog=Omcl71,26;jgi=DappuDraft_330931;tilex=13306;ltr_region=Gypsy_5
scaffold_153	NCBI_GNO	mRNA	104504	105166	27.8869	-	.	ID=NCBI_GNO_220794;Parent=gene220794;flags=Start,Stop;tandy=td_s3c2g3;paralog=Omcl33,36;jgi=DappuDraft_330958;tilex=12468;ltr_region=Gypsy_2
scaffold_153	NCBI_GNO	mRNA	119743	127777	62.2911	+	.	ID=NCBI_GNO_228794;Parent=gene228794;Dbxref=AAM62744.1,WFes0071072,WFes0071073,WFes0123920,WFes0131923,WFes0131924;flags=Prot,EST,Start,Stop;protein_hit=gi|21553651|gb|AAM62744.1|;paralog=Omcl686,4;jgiov=DappuDraft_63855;Note=Q8LEB4_ARATH/Q8LEB4/Arabidopsis thaliana/Thymidylate kinase-like protein;Ontology_term=GO:0005524/F:ATP binding,GO:0004798/F:thymidylate kinase activity,GO:0006233/P:dTDP biosynthetic process,GO:0006235/P:dTTP biosynthetic process,Pfam:PF02223/Thymidylate_kin;tilex=46979;estov=WFes0007145,WFes0037977,WFes0044871,WFes0044872,WFes0120309,WFes0120310,WFes0126249,WFes0161666,WFes0161667,WFes0178435;modpr=FB:CG5757,MGI:108396,S000003818;est_group=biotic:Fish_predation-juvenile,inorganic:Acid_stress,inorganic:High_salinity,inorganic:Hypoxia-juvenile,inorganic:MF_hormone-adult,metal:Low_copper,metal:Low_m_arsenic_III,other:CBTX;ltr_region=Bel_15
scaffold_154	NCBI_GNO	mRNA	71637	73238	37.483	+	.	ID=NCBI_GNO_4804;Parent=gene4804;flags=Start,Stop;paralog=Omcl9,67;jgiov=DappuDraft_115380;ltr_region=Gypsy_11
scaffold_154	NCBI_GNO	mRNA	73280	76286	66.4537	+	.	ID=NCBI_GNO_6804;Parent=gene6804;flags=Start,Stop;paralog=Omcl9,67;jgiov=DappuDraft_115380;modpr=WB:WBGene00018416;ltr_region=Gypsy_11
scaffold_154	NCBI_GNO	mRNA	78831	79610	17.5501	+	.	ID=NCBI_GNO_8804;Parent=gene8804;flags=Start,Stop;paralog=Omcl629,5;jgi=DappuDraft_330983;ltr_region=Gypsy_11
scaffold_154	NCBI_GNO	mRNA	81037	82536	28.4303	+	.	ID=NCBI_GNO_10804;Parent=gene10804;flags=Start,Stop;tandy=td_s4c4g0;paralog=Omcl1,95;jgi=DappuDraft_330984;ltr_region=Gypsy_11
scaffold_1540	NCBI_GNO	mRNA	4376	5008	28.7654	-	.	ID=NCBI_GNO_223264;Parent=gene223264;flags=Start,Stop;paralog=Omcl130,18;jgiov=DappuDraft_120517;ltr_region=Bel_16
scaffold_16	NCBI_GNO	mRNA	836361	841984	95.3054	+	.	ID=NCBI_GNO_286164;Parent=gene286164;Dbxref=CAB53471.1;flags=Prot,Start,Stop;protCDS=838400 838759;tandy=td_s6c114g1;paralog=Omcl293,9;jgiov=DappuDraft_100888;Note=Q9U5P0_LAMFL/Q9U5P0/Lampetra fluviatilis/Polymerase polyprotein;Ontology_term=GO:0008233/F:peptidase activity,GO:0003723/F:RNA binding,GO:0003964/F:RNA-directed DNA polymerase activity,GO:0006278/P:RNA-dependent DNA replication,Pfam:PF00078/RVT_1;tilex=2757;ltr_region=Gypsy_26
scaffold_16	NCBI_GNO	mRNA	891438	893917	37.9011	-	.	ID=NCBI_GNO_304164;Parent=gene304164;flags=Start,Stop;tandy=td_s6c125g2;jgi=DappuDraft_316064;ltr_region=Copia_20
scaffold_16	NCBI_GNO	mRNA	894935	896601	62.8099	-	.	ID=NCBI_GNO_306164;Parent=gene306164;flags=Start,Stop;tandy=td_s6c125g2;jgi=DappuDraft_316065;tilex=10530;ltr_region=Copia_20
scaffold_16	NCBI_GNO	mRNA	1519443	1526737	115.754	+	.	ID=NCBI_GNO_522164;Parent=gene522164;flags=Start,Stop;tandy=td_s6c248g1;paralog=Omcl15,58;jgiov=DappuDraft_240627;tilex=6841;estov=WFes0154453,WFes0176524;modpr=WB:WBGene00020324;est_group=metal:Low_mixed_metals,other:CBTX;ltr_region=Copia_21
scaffold_161	NCBI_GNO	mRNA	267595	271540	58.1969	+	.	ID=NCBI_GNO_266814;Parent=gene266814;Dbxref=ABE87439.1,NP_001064211.1;flags=Prot,Start,Stop;protCDS=269738 271489;protein_hit=gi|92884640|gb|ABE87439.1|;paralog=Omcl172,14;Note=Q1RVB5_MEDTR/Q1RVB5/Medicago truncatula/Peptidase, cysteine peptidase active site,Zinc finger, CCHC-type,Peptidase aspartic, catalytic,Polynucleotidyl transferase, Ribonuclease H fold;Ontology_term=GO:0003677/F:DNA binding,GO:0016740/F:transferase activity,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve,Pfam:PF07727/RVT_2,Pfam:PF00098/zf-CCHC;tilex=14676;ltr_region=Copia_18
scaffold_167	NCBI_GNO	mRNA	43436	55729	49.327	-	.	ID=NCBI_GNO_346824;Parent=gene346824;flags=Start,Stop;tandy=td_s7c1g0;paralog=Omcl167,15;jgiov=DappuDraft_115843,DappuDraft_262286,DappuDraft_64236;tilex=18684;ltr_region=Bel_17
scaffold_167	NCBI_GNO	mRNA	56258	56800	21.4949	-	.	ID=NCBI_GNO_348824;Parent=gene348824;flags=Start,Stop;tandy=td_s7c1g1;paralog=Omcl167,15;jgiov=DappuDraft_115843;tilex=4080;ltr_region=Bel_17
scaffold_167	NCBI_GNO	mRNA	56799	57113	24.6013	+	.	ID=NCBI_GNO_350824;Parent=gene350824;flags=Start,Stop;tandy=td_s7c1g1;jgiov=DappuDraft_115843;tilex=4131;ltr_region=Bel_17
scaffold_167	NCBI_GNO	mRNA	57241	58982	86.1412	-	.	ID=NCBI_GNO_352824;Parent=gene352824;flags=Start,Stop;tandy=td_s7c1g1;paralog=Omcl187,14;jgiov=DappuDraft_115844;tilex=7318;ltr_region=Bel_17
scaffold_167	NCBI_GNO	mRNA	112110	117814	40.4939	-	.	ID=NCBI_GNO_366824;Parent=gene366824;flags=Start,Stop;tandy=td_s7c3g0;paralog=Omcl3,90;jgi=DappuDraft_331525;tilex=10802;estov=WFes0134865;est_group=inorganic:High_salinity;ltr_region=Gypsy_24
scaffold_167	NCBI_GNO	mRNA	117897	122082	104.816	-	.	ID=NCBI_GNO_368824;Parent=gene368824;flags=Start,Stop;tandy=td_s7c3g1;paralog=Omcl3,90;jgi=DappuDraft_331526;tilex=26557;estov=WFes0134865;est_group=inorganic:High_salinity;ltr_region=Gypsy_24
scaffold_167	NCBI_GNO	mRNA	122097	122303	24.2924	-	.	ID=NCBI_GNO_370824;Parent=gene370824;flags=Start,Stop;tandy=td_s7c4g1;tilex=1590;ltr_region=Gypsy_24
scaffold_168	NCBI_GNO	mRNA	238712	239093	28.7039	-	.	ID=NCBI_GNO_94834;Parent=gene94834;flags=Start,Stop;tandy=td_s8c24g0;paralog=Omcl1344,3;jgiov=DappuDraft_64261;ltr_region=Copia_19
scaffold_168	NCBI_GNO	mRNA	239514	239897	15.5812	+	.	ID=NCBI_GNO_96834;Parent=gene96834;flags=Start,Stop;tandy=td_s8c24g0;paralog=Omcl2726,2;jgiov=DappuDraft_64261;ltr_region=Copia_19
scaffold_169	NCBI_GNO	mRNA	74253	75584	58.3248	+	.	ID=NCBI_GNO_134834;Parent=gene134834;flags=Start,Stop;tandy=td_s9c4g0;paralog=Omcl459,6;jgi=DappuDraft_262406;tilex=15763;ltr_region=Gypsy_25
scaffold_169	NCBI_GNO	mRNA	75585	75932	12.9234	+	.	ID=NCBI_GNO_136834;Parent=gene136834;flags=Start,Stop;paralog=Omcl459,6;jgi=DappuDraft_262407;tilex=21184;ltr_region=Gypsy_25
scaffold_169	NCBI_GNO	mRNA	77799	80791	17.6385	+	.	ID=NCBI_GNO_138834;Parent=gene138834;Dbxref=AAN15747.1;flags=Prot,Start,Stop,Frameshifts;protCDS=77955 80713;protein_hit=gi|32394793|gb|AAN15747.1|;paralog=Omcl5,86;Note=Q7T271_PAROL/Q7T271/Paralichthys olivaceus/Reverse transcriptase-like protein;Ontology_term=GO:0003723/F:RNA binding,GO:0003964/F:RNA-directed DNA polymerase activity,GO:0006278/P:RNA-dependent DNA replication,Pfam:PF03372/Exo_endo_phos,Pfam:PF00078/RVT_1;tilex=9580;modpr=WB:WBGene00021356;ltr_region=Gypsy_25
scaffold_169	NCBI_GNO	mRNA	81154	81570	13.5545	+	.	ID=NCBI_GNO_140834;Parent=gene140834;flags=Start,Stop;jgi=DappuDraft_331617;tilex=9677;ltr_region=Gypsy_25
scaffold_169	NCBI_GNO	mRNA	81864	84152	57.1097	-	.	ID=NCBI_GNO_142834;Parent=gene142834;flags=Start,Stop;paralog=Omcl244,11;tilex=8180;estov=WFes0006871;ltr_region=Gypsy_25
scaffold_169	NCBI_GNO	mRNA	163485	164874	76.6205	+	.	ID=NCBI_GNO_172834;Parent=gene172834;flags=Start,Stop;tandy=td_s9c6g1;paralog=Omcl3,90;jgiov=DappuDraft_115922;tilex=14331;estov=WFes0105737;est_group=normal:Males-adult;ltr_region=Gypsy_8
scaffold_170	NCBI_GNO	mRNA	41566	42527	39.3129	+	.	ID=NCBI_GNO_196834;Parent=gene196834;flags=Start,Stop;paralog=Omcl293,9;jgi=DappuDraft_331643;tilex=12997;ltr_region=Gypsy_27
scaffold_170	NCBI_GNO	mRNA	42710	43513	33.4555	+	.	ID=NCBI_GNO_198834;Parent=gene198834;flags=Start,Stop;jgi=DappuDraft_331644;tilex=11011;ltr_region=Gypsy_27
scaffold_172	NCBI_GNO	mRNA	78501	87863	51.7482	+	.	ID=NCBI_GNO_328834;Parent=gene328834;flags=Start,Stop;tandy=td_s2c3g0;paralog=Omcl798,4;jgi=DappuDraft_331710;tilex=24095;ltr_region=Bel_18
scaffold_172	NCBI_GNO	mRNA	98975	99708	32.1695	-	.	ID=NCBI_GNO_336834;Parent=gene336834;flags=Start,Stop;paralog=Omcl1,95;jgiov=DappuDraft_115996;tilex=30467;ltr_region=Gypsy_28
scaffold_172	NCBI_GNO	mRNA	100031	109176	100.184	-	.	ID=NCBI_GNO_338834;Parent=gene338834;flags=Start,Stop;paralog=Omcl9,67;jgiov=DappuDraft_262567,DappuDraft_262568,DappuDraft_262570;tilex=23852;ltr_region=Gypsy_28
scaffold_172	NCBI_GNO	mRNA	113666	114136	19.9952	+	.	ID=NCBI_GNO_340834;Parent=gene340834;flags=Start,Stop;tandy=td_s2c6g0;paralog=Omcl102,21;jgiov=DappuDraft_115998;ltr_region=Gypsy_13
scaffold_175	NCBI_GNO	mRNA	116953	134959	42.4314	+	.	ID=NCBI_GNO_274844;Parent=gene274844;Dbxref=AAF19226.1;flags=Prot,Start,Stop;protCDS=122002 125181;pstop=123894 123896;tandy=td_s5c16g0;paralog=Omcl44,31;jgiov=DappuDraft_116131,DappuDraft_116132,DappuDraft_116133,DappuDraft_262772,DappuDraft_262773,DappuDraft_262774,DappuDraft_262779;Note=Q9SHR5_ARATH/Q9SHR5/Arabidopsis thaliana/F28L22.3 protein;Ontology_term=GO:0003677/F:DNA binding,GO:0016787/F:hydrolase activity,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve,Pfam:PF07727/RVT_2,Pfam:PF00098/zf-CCHC;tilex=36133;modpr=FB:CG32228;ltr_region=Copia_1
scaffold_175	NCBI_GNO	mRNA	141201	148845	137.167	+	.	ID=NCBI_GNO_278844;Parent=gene278844;Dbxref=ABE87439.1,AAF19226.1,WFes0109585,WFes0109586;flags=EST,Prot,Start,Stop;protCDS=146006 148435;protein_hit=gi|92884640|gb|ABE87439.1|;pstop=147440 147442;tandy=td_s5c17g0;paralog=Omcl44,31;jgiov=DappuDraft_116135,DappuDraft_116136,DappuDraft_262783;Note=Q1RVB5_MEDTR/Q1RVB5/Medicago truncatula/Peptidase, cysteine peptidase active site,Zinc finger, CCHC-type,Peptidase aspartic, catalytic,Polynucleotidyl transferase, Ribonuclease H fold;Ontology_term=GO:0003677/F:DNA binding,GO:0016740/F:transferase activity,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve,Pfam:PF07727/RVT_2,Pfam:PF00098/zf-CCHC;tilex=29626;estov=WFes0108469,WFes0108470;est_group=normal:Males-adult;ltr_region=Copia_22
scaffold_177	NCBI_GNO	mRNA	133230	146030	204.912	-	.	ID=NCBI_GNO_432844;Parent=gene432844;Dbxref=AAH81588.1,NP_004444.2,NP_080070.1,NP_610536.1,WFes0026153,WFes0103948,WFes0103949,WFes0165822;flags=EST,Prot,Start,Stop,Frameshifts;protCDS=133512 145874;protein_hit=gi|51859067|gb|AAH81588.1|;pstop=135131 135133;tandy=td_s7c23g0;paralog=Omcl2507,2;jgiov=DappuDraft_116184,DappuDraft_116185,DappuDraft_262882;Note=Q66I16_DANRE/Q66I16/Danio rerio/Zgc:92093;Ontology_term=GO:0016021/C:integral to membrane,GO:0016491/F:oxidoreductase activity,GO:0006118/P:electron transport,GO:0006810/P:transport,Pfam:PF05187/ETF_QO,Pfam:PF07992/Pyr_redox_2;tilex=44350;modpr=FB:CG12140,MGI:106100,S000005883,WB:WBGene00002855;est_group=inorganic:TitaniumO2_nanoparticle,normal:Females-adult,normal:Unchallenged-juvenile;ltr_region=Gypsy_10
scaffold_178	NCBI_GNO	mRNA	200539	238048	79.3312	+	.	ID=NCBI_GNO_36854;Parent=gene36854;flags=Start,Stop;tandy=td_s8c12g0;jgiov=DappuDraft_116230,DappuDraft_116232,DappuDraft_262941,DappuDraft_262942;tilex=23689;ltr_region=Copia_23
scaffold_181	NCBI_GNO	mRNA	62740	63126	17.465	-	.	ID=NCBI_GNO_304854;Parent=gene304854;flags=Start,Stop;tandy=td_s1c7g0;paralog=Omcl1009,3;jgiov=DappuDraft_263071;ltr_region=Gypsy_1
scaffold_181	NCBI_GNO	mRNA	67123	67402	27.2556	-	.	ID=NCBI_GNO_306854;Parent=gene306854;flags=Start,Stop;tandy=td_s1c6g1;tilex=4650;ltr_region=Gypsy_1
scaffold_181	NCBI_GNO	mRNA	68059	68787	33.4965	-	.	ID=NCBI_GNO_308854;Parent=gene308854;flags=Start,Stop;tandy=td_s1c6g2;paralog=Omcl3,90;jgi=DappuDraft_332126;tilex=10392;ltr_region=Gypsy_1
scaffold_181	NCBI_GNO	mRNA	68979	69422	31.7444	+	.	ID=NCBI_GNO_310854;Parent=gene310854;flags=Start,Stop;tandy=td_s1c7g0;estov=WFes0024439,WFes0024440,WFes0104331,WFes0131323,WFes0131324;est_group=inorganic:High_salinity,normal:Females-adult,other:CANB;ltr_region=Gypsy_1
scaffold_19	NCBI_GNO	mRNA	1418776	1442263	70.9799	+	.	ID=NCBI_GNO_354194;Parent=gene354194;flags=Start,Stop;paralog=Omcl10,66;jgiov=DappuDraft_102041,DappuDraft_102042,DappuDraft_102043,DappuDraft_241823,DappuDraft_241824;tilex=23600;ltr_region=Gypsy_30
scaffold_192	NCBI_GNO	mRNA	141336	142376	19.4733	+	.	ID=NCBI_GNO_238874;Parent=gene238874;flags=Start,Stop;paralog=Omcl293,9;jgi=DappuDraft_332471;tilex=15220;ltr_region=Gypsy_29
scaffold_192	NCBI_GNO	mRNA	142421	149339	36.3753	+	.	ID=NCBI_GNO_240874;Parent=gene240874;flags=Start,Stop;jgi=DappuDraft_332472,DappuDraft_332472;tilex=25317;estov=WFes0127119,WFes0127120,WFes0147559,WFes0147560;est_group=biotic:Bacterial_infection,inorganic:Acid_stress;ltr_region=Gypsy_29
scaffold_193	NCBI_GNO	mRNA	125916	131478	-5.31843	-	.	ID=NCBI_GNO_290874;Parent=gene290874;Dbxref=CAD32253.1;flags=Prot,Start,Stop;protCDS=126234 129237;tandy=td_s3c5g0;paralog=Omcl1378,2;jgiov=DappuDraft_65016;Note=Q8MNR4_DROME/Q8MNR4/Drosophila melanogaster/Putative uncharacterized protein,Gag-pol polyprotein;Ontology_term=GO:0004190/F:aspartic-type endopeptidase activity,GO:0003677/F:DNA binding,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,GO:0006508/P:proteolysis,Pfam:PF05380/Peptidase_A17,Pfam:PF00665/rve;tilex=9921;modpr=WB:WBGene00019990;ltr_region=Bel_3
scaffold_193	NCBI_GNO	mRNA	131748	133366	34.949	-	.	ID=NCBI_GNO_292874;Parent=gene292874;flags=Start,Stop;jgi=DappuDraft_332498;tilex=9145;ltr_region=Bel_3
scaffold_193	NCBI_GNO	mRNA	137981	144422	74.6436	-	.	ID=NCBI_GNO_298874;Parent=gene298874;flags=Start,Stop;paralog=Omcl3,90;jgiov=DappuDraft_116683,DappuDraft_263629;tilex=16630;ltr_region=Gypsy_1
scaffold_193	NCBI_GNO	mRNA	157635	159231	53.0608	+	.	ID=NCBI_GNO_308874;Parent=gene308874;flags=Start,Stop;paralog=Omcl139,17;jgi=DappuDraft_116685;tilex=29557;ltr_region=Gypsy_15
scaffold_196	NCBI_GNO	mRNA	40607	43760	61.8681	+	.	ID=NCBI_GNO_72884;Parent=gene72884;flags=Start,Stop;tandy=td_s6c1g1;paralog=Omcl118,19;jgiov=DappuDraft_116724;tilex=4810;ltr_region=Bel_4
scaffold_196	NCBI_GNO	mRNA	49490	54396	90.2062	-	.	ID=NCBI_GNO_74884;Parent=gene74884;flags=Start,Stop;paralog=Omcl4,87;jgi=DappuDraft_332564;tilex=26161;ltr_region=Bel_4
scaffold_196	NCBI_GNO	mRNA	112632	113441	29.4889	+	.	ID=NCBI_GNO_108884;Parent=gene108884;flags=Start,Stop;paralog=Omcl3,90;jgiov=DappuDraft_263731;tilex=16289;ltr_region=Gypsy_3
scaffold_201	NCBI_GNO	mRNA	121142	134527	52.3415	+	.	ID=NCBI_GNO_308884;Parent=gene308884;Dbxref=ABE85098.1;flags=Prot,Start,Stop,Frameshifts;protCDS=121151 123536;pstop=122450 122452,123172 123174;tandy=td_s1c9g2;paralog=Omcl9,67;jgiov=DappuDraft_116825,DappuDraft_116826;tilex=36813;ltr_region=Gypsy_11
scaffold_201	NCBI_GNO	mRNA	134524	137525	58.369	+	.	ID=NCBI_GNO_310884;Parent=gene310884;flags=Start,Stop;tandy=td_s1c9g3;paralog=Omcl9,67;jgiov=DappuDraft_116826;tilex=25408;modpr=WB:WBGene00018416;ltr_region=Gypsy_11
scaffold_201	NCBI_GNO	mRNA	141226	141771	23.0982	+	.	ID=NCBI_GNO_312884;Parent=gene312884;flags=Start,Stop;tandy=td_s1c9g3;paralog=Omcl680,4;jgiov=DappuDraft_116827;tilex=9063;ltr_region=Gypsy_11
scaffold_201	NCBI_GNO	mRNA	142773	144272	25.4678	+	.	ID=NCBI_GNO_314884;Parent=gene314884;flags=Start,Stop;tandy=td_s1c9g3;paralog=Omcl1,95;jgi=DappuDraft_332684;ltr_region=Gypsy_11
scaffold_201	NCBI_GNO	mRNA	152425	155795	104.295	+	.	ID=NCBI_GNO_316884;Parent=gene316884;flags=Start,Stop;tandy=td_s1c15g0;paralog=Omcl44,31;estov=WFes0152919,WFes0152920;est_group=metal:Low_mixed_metals;ltr_region=Copia_9
scaffold_205	NCBI_GNO	mRNA	69233	69721	29.1528	+	.	ID=NCBI_GNO_94894;Parent=gene94894;flags=Start,Stop;jgiov=DappuDraft_116880;tilex=7560;ltr_region=Copia_24
scaffold_205	NCBI_GNO	mRNA	71946	72164	26.0692	-	.	ID=NCBI_GNO_96894;Parent=gene96894;flags=Start,Stop;tilex=9591;ltr_region=Copia_24
scaffold_205	NCBI_GNO	mRNA	73676	74443	33.9666	-	.	ID=NCBI_GNO_98894;Parent=gene98894;flags=Start,Stop;jgi=DappuDraft_332739;tilex=2723;estov=WFes0008590;ltr_region=Copia_24
scaffold_208	NCBI_GNO	mRNA	149960	153820	40.5858	-	.	ID=NCBI_GNO_250894;Parent=gene250894;flags=Start,Stop;tandy=td_s8c16g0;paralog=Omcl2117,2;jgi=DappuDraft_332815;ltr_region=Copia_25
scaffold_212	NCBI_GNO	mRNA	128247	137880	46.6926	-	.	ID=NCBI_GNO_206904;Parent=gene206904;flags=Start,Stop;tandy=td_s2c15g0;paralog=Omcl1954,2;jgiov=DappuDraft_117038;tilex=15332;ltr_region=Copia_26
scaffold_218	NCBI_GNO	mRNA	5987	11129	62.9716	-	.	ID=NCBI_GNO_38914;Parent=gene38914;Dbxref=CAH66122.1,AAX95391.1;flags=Prot,Start,Stop;protCDS=6035 7357;protein_hit=gi|116309003|emb|CAH66122.1|;paralog=Omcl44,31;Note=Q01M93_ORYSA/Q01M93/Oryza sativa/OSIGBa0146N20.7 protein;Ontology_term=GO:0003677/F:DNA binding,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve,Pfam:PF07727/RVT_2;ltr_region=Copia_16
scaffold_218	NCBI_GNO	mRNA	81495	83295	43.7313	-	.	ID=NCBI_GNO_56914;Parent=gene56914;flags=Start,Stop;tandy=td_s8c9g0;paralog=Omcl48,29;jgi=DappuDraft_333044;tilex=2645;ltr_region=Gypsy_32
scaffold_218	NCBI_GNO	mRNA	83571	88080	73.555	-	.	ID=NCBI_GNO_58914;Parent=gene58914;Dbxref=CAB53471.1;flags=Prot,Start,Stop;protCDS=85423 85920;tandy=td_s8c9g1;paralog=Omcl48,29;Note=Q9U5P0_LAMFL/Q9U5P0/Lampetra fluviatilis/Polymerase polyprotein;Ontology_term=GO:0008233/F:peptidase activity,GO:0003723/F:RNA binding,GO:0003964/F:RNA-directed DNA polymerase activity,GO:0006278/P:RNA-dependent DNA replication,Pfam:PF00078/RVT_1;tilex=16053;modpr=WB:WBGene00018416;ltr_region=Gypsy_32
scaffold_22	NCBI_GNO	mRNA	75466	75870	29.8662	+	.	ID=NCBI_GNO_48224;Parent=gene48224;flags=Start,Stop;jgi=DappuDraft_317733;tilex=29704;modpr=MGI:1924268,WB:WBGene00000681,WB:WBGene00000738;ltr_region=Gypsy_37
scaffold_22	NCBI_GNO	mRNA	76030	76995	22.6062	+	.	ID=NCBI_GNO_50224;Parent=gene50224;flags=Start,Stop;paralog=Omcl21,46;jgi=DappuDraft_317734;tilex=20795;ltr_region=Gypsy_37
scaffold_22	NCBI_GNO	mRNA	81834	82874	29.3931	+	.	ID=NCBI_GNO_52224;Parent=gene52224;flags=Start,Stop;paralog=Omcl60,27;jgi=DappuDraft_317735;tilex=9819;ltr_region=Gypsy_37
scaffold_22	NCBI_GNO	mRNA	83805	84194	14.0023	+	.	ID=NCBI_GNO_54224;Parent=gene54224;flags=Start,Stop;paralog=Omcl352,8;tilex=7401;ltr_region=Gypsy_37
scaffold_22	NCBI_GNO	mRNA	85208	86038	27.3921	+	.	ID=NCBI_GNO_56224;Parent=gene56224;flags=Start,Stop;paralog=Omcl2110,2;jgi=DappuDraft_242495;tilex=16325;ltr_region=Gypsy_37
scaffold_22	NCBI_GNO	mRNA	97460	136607	112.544	-	.	ID=NCBI_GNO_66224;Parent=gene66224;flags=Start,Stop;tandy=td_s2c10g0;paralog=Omcl293,9;jgiov=DappuDraft_102596,DappuDraft_242501;tilex=35366;ltr_region=Gypsy_26
scaffold_22	NCBI_GNO	mRNA	1022353	1029212	130.543	-	.	ID=NCBI_GNO_378224;Parent=gene378224;flags=Start,Stop;tandy=td_s2c118g0;paralog=Omcl191,14;jgiov=DappuDraft_242719,DappuDraft_242722;tilex=34056;estov=WFes0039488;est_group=biotic:Fish_predation-juvenile;ltr_region=Gypsy_38
scaffold_22	NCBI_GNO	mRNA	1079025	1117835	108.131	+	.	ID=NCBI_GNO_412224;Parent=gene412224;flags=Start,Stop;tandy=td_s2c121g0;paralog=Omcl239,11;jgiov=DappuDraft_102730,DappuDraft_102732,DappuDraft_102733,DappuDraft_242743;tilex=65535;ltr_region=Bel_8
scaffold_22	NCBI_GNO	mRNA	1125502	1128128	62.0262	+	.	ID=NCBI_GNO_422224;Parent=gene422224;flags=Start,Stop;jgiov=DappuDraft_28917;tilex=11634;ltr_region=Copia_27
scaffold_22	NCBI_GNO	mRNA	1134872	1158159	83.4512	-	.	ID=NCBI_GNO_430224;Parent=gene430224;flags=Start,Stop;tandy=td_s2c137g0;paralog=Omcl475,6;jgiov=DappuDraft_102738,DappuDraft_242755;tilex=16746;modpr=WB:WBGene00019610;ltr_region=Bel_19
scaffold_22	NCBI_GNO	mRNA	1233010	1235760	0.791717	+	.	ID=NCBI_GNO_460224;Parent=gene460224;Dbxref=CAD39797.2;flags=Prot,Start,Stop;protCDS=1233139 1235423;tandy=td_s2c150g0;paralog=Omcl44,31;Note=Q7XX19_ORYSJ/Q7XX19/Oryza sativa subsp. japonica/OSJNBa0071G03.10 protein;Ontology_term=GO:0003677/F:DNA binding,GO:0016787/F:hydrolase activity,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve,Pfam:PF07727/RVT_2,Pfam:PF00098/zf-CCHC;ltr_region=Copia_28
scaffold_22	NCBI_GNO	mRNA	1293848	1299988	45.6701	+	.	ID=NCBI_GNO_478224;Parent=gene478224;flags=Start,Stop;paralog=Omcl1574,2;jgi=DappuDraft_317951;tilex=14450;ltr_region=Copia_29
scaffold_22	NCBI_GNO	mRNA	1306564	1308282	48.2305	+	.	ID=NCBI_GNO_484224;Parent=gene484224;flags=Start,Stop;tandy=td_s2c163g1;paralog=Omcl490,6;jgi=DappuDraft_317954;tilex=13129;estov=WFes0140365,WFes0140886,WFes0140887;est_group=inorganic:Fullerene_nanoparticle;ltr_region=Gypsy_3
scaffold_224	NCBI_GNO	mRNA	8689	11529	37.5844	-	.	ID=NCBI_GNO_340914;Parent=gene340914;flags=Start,Stop;paralog=Omcl71,26;jgiov=DappuDraft_264699;ltr_region=Gypsy_34
scaffold_224	NCBI_GNO	mRNA	11856	13382	50.6846	-	.	ID=NCBI_GNO_342914;Parent=gene342914;flags=Start,Stop;paralog=Omcl71,26;jgi=DappuDraft_333187;tilex=846;ltr_region=Gypsy_34
scaffold_225	NCBI_GNO	mRNA	13354	14796	35.8038	+	.	ID=NCBI_GNO_10924;Parent=gene10924;flags=Start,Stop;paralog=Omcl9,67;tilex=35517;ltr_region=Gypsy_11
scaffold_225	NCBI_GNO	mRNA	15318	15878	14.3319	+	.	ID=NCBI_GNO_12924;Parent=gene12924;flags=Start,Stop;paralog=Omcl9,67;jgi=DappuDraft_333202;ltr_region=Gypsy_11
scaffold_225	NCBI_GNO	mRNA	19885	21270	28.8673	+	.	ID=NCBI_GNO_14924;Parent=gene14924;flags=Start,Stop;paralog=Omcl1,95;jgiov=DappuDraft_117296;ltr_region=Gypsy_11
scaffold_226	NCBI_GNO	mRNA	63447	63937	48.6861	-	.	ID=NCBI_GNO_72924;Parent=gene72924;flags=Start,Stop;tandy=td_s6c3g0;jgi=DappuDraft_333233;tilex=2351;ltr_region=Copia_10
scaffold_227	NCBI_GNO	mRNA	68411	69076	27.6589	-	.	ID=NCBI_GNO_112924;Parent=gene112924;flags=Start,Stop;paralog=Omcl1,95;ltr_region=Gypsy_35
scaffold_227	NCBI_GNO	mRNA	69482	69883	25.4211	-	.	ID=NCBI_GNO_114924;Parent=gene114924;flags=Start,Stop;paralog=Omcl445,6;jgi=DappuDraft_117332;ltr_region=Gypsy_35
scaffold_227	NCBI_GNO	mRNA	71729	72715	32.2881	-	.	ID=NCBI_GNO_116924;Parent=gene116924;flags=Start,Stop;paralog=Omcl88,23;jgi=DappuDraft_264791;tilex=9480;ltr_region=Gypsy_35
scaffold_227	NCBI_GNO	mRNA	73246	74268	66.1255	-	.	ID=NCBI_GNO_118924;Parent=gene118924;flags=Start,Stop;paralog=Omcl387,7;jgi=DappuDraft_333257;ltr_region=Gypsy_35
scaffold_228	NCBI_GNO	mRNA	12900	25259	38.4788	-	.	ID=NCBI_GNO_124924;Parent=gene124924;flags=Start,Stop;tandy=td_s8c1g1;paralog=Omcl199,13;tilex=19308;ltr_region=N219
scaffold_228	NCBI_GNO	mRNA	25654	28902	42.0723	-	.	ID=NCBI_GNO_126924;Parent=gene126924;flags=Start,Stop;tandy=td_s8c1g2;paralog=Omcl199,13;jgi=DappuDraft_333261;tilex=32883;modpr=FB:CG4925;ltr_region=N219
scaffold_231	NCBI_GNO	mRNA	59348	63304	86.4062	-	.	ID=NCBI_GNO_226924;Parent=gene226924;flags=Start,Stop;paralog=Omcl139,17;jgiov=DappuDraft_264885,DappuDraft_264887;ltr_region=Gypsy_14
scaffold_233	NCBI_GNO	mRNA	376	17165	41.6095	-	.	ID=NCBI_GNO_2934;Parent=gene2934;flags=Start,Stop;tandy=td_s3c2g0;jgiov=DappuDraft_117422;tilex=47141;ltr_region=Copia_30
scaffold_234	NCBI_GNO	mRNA	3086	3595	25.7046	-	.	ID=NCBI_GNO_56934;Parent=gene56934;flags=Start,Stop;paralog=Omcl139,17;jgi=DappuDraft_117439;tilex=15365;ltr_region=Gypsy_15
scaffold_234	NCBI_GNO	mRNA	5130	5387	18.4854	-	.	ID=NCBI_GNO_58934;Parent=gene58934;flags=Start,Stop;paralog=Omcl139,17;jgi=DappuDraft_333375;tilex=15705;ltr_region=Gypsy_15
scaffold_234	NCBI_GNO	mRNA	6466	6720	17.2473	-	.	ID=NCBI_GNO_60934;Parent=gene60934;flags=Start,Stop;jgi=DappuDraft_333376;tilex=23912;ltr_region=Gypsy_15
scaffold_234	NCBI_GNO	mRNA	80191	81820	86.95	-	.	ID=NCBI_GNO_78934;Parent=gene78934;flags=Start,Stop;paralog=Omcl2551,2;jgi=DappuDraft_333387;ltr_region=Copia_31
scaffold_234	NCBI_GNO	mRNA	83572	84659	32.0116	-	.	ID=NCBI_GNO_80934;Parent=gene80934;flags=Start,Stop;jgi=DappuDraft_333388;ltr_region=Copia_31
scaffold_234	NCBI_GNO	mRNA	103580	104023	32.0846	-	.	ID=NCBI_GNO_82934;Parent=gene82934;flags=Start,Stop;jgi=DappuDraft_117451;tilex=3771;ltr_region=Bel_4
scaffold_234	NCBI_GNO	mRNA	104979	105678	30.0651	+	.	ID=NCBI_GNO_84934;Parent=gene84934;flags=Start,Stop;jgiov=DappuDraft_117452;ltr_region=Bel_4
scaffold_234	NCBI_GNO	mRNA	106550	110091	49.8532	+	.	ID=NCBI_GNO_86934;Parent=gene86934;flags=Start,Stop;paralog=Omcl118,19;jgiov=DappuDraft_265000;tilex=14295;ltr_region=Bel_4
scaffold_234	NCBI_GNO	mRNA	111727	112083	35.2316	-	.	ID=NCBI_GNO_88934;Parent=gene88934;flags=Start,Stop;paralog=Omcl22,46;jgi=DappuDraft_333392;ltr_region=Bel_4
scaffold_235	NCBI_GNO	mRNA	34232	50827	57.7066	-	.	ID=NCBI_GNO_130934;Parent=gene130934;flags=Start,Stop;tandy=td_s5c1g0;paralog=Omcl118,19;jgiov=DappuDraft_117461;tilex=45798;ltr_region=Bel_4
scaffold_235	NCBI_GNO	mRNA	72214	86587	94.3365	+	.	ID=NCBI_GNO_142934;Parent=gene142934;Dbxref=AAI24960.1;flags=Prot,Start,Stop;protCDS=85746 86284;protein_hit=gi|115528684|gb|AAI24960.1|;tandy=td_s5c2g1;paralog=Omcl660,4;jgiov=DappuDraft_117464,DappuDraft_18001,DappuDraft_65628;Note=Q08AY0_XENLA/Q08AY0/Xenopus laevis/Putative uncharacterized protein;tilex=60774;modpr=FB:CG7492,WB:WBGene00017457;ltr_region=Bel_18
scaffold_235	NCBI_GNO	mRNA	87925	91547	33.4367	-	.	ID=NCBI_GNO_48933;Parent=gene110934;Dbxref=BJ932365.1,BJ932366.1;flags=EST,Start,Stop,FullSupCDS;maxCDS=88229 91222;jgiov=DappuDraft_265043;tilex=11374;estov=WFes0008087,WFes0008088;ltr_region=Copia_32
scaffold_235	NCBI_GNO	mRNA	92109	93397	77.6994	-	.	ID=NCBI_GNO_146934;Parent=gene146934;flags=Start,Stop;jgi=DappuDraft_333421;tilex=6457;ltr_region=Copia_32
scaffold_239	NCBI_GNO	mRNA	14600	17115	65.0382	+	.	ID=NCBI_GNO_252934;Parent=gene252934;flags=Start,Stop;paralog=Omcl139,17;jgiov=DappuDraft_265133;tilex=11401;ltr_region=Gypsy_14
scaffold_239	NCBI_GNO	mRNA	18138	18611	30.3773	+	.	ID=NCBI_GNO_254934;Parent=gene254934;flags=Start,Stop;paralog=Omcl139,17;jgi=DappuDraft_333475;ltr_region=Gypsy_14
scaffold_242	NCBI_GNO	mRNA	40191	41492	39.9302	-	.	ID=NCBI_GNO_6944;Parent=gene6944;flags=Start,Stop;tandy=td_s2c2g2;paralog=Omcl522,5;tilex=4339;ltr_region=Copia_33
scaffold_25	NCBI_GNO	mRNA	205874	214912	202.74	+	.	ID=NCBI_GNO_132254;Parent=gene132254;flags=Start,Stop;paralog=Omcl1596,2;jgiov=DappuDraft_103274;tilex=30064;modpr=MGI:2154433;ltr_region=Copia_8
scaffold_253	NCBI_GNO	mRNA	33956	35014	20.8326	+	.	ID=NCBI_GNO_2954;Parent=gene2954;flags=Start,Stop;tandy=td_s3c1g0;tilex=16302;ltr_region=Gypsy_39
scaffold_253	NCBI_GNO	mRNA	39251	40593	43.098	-	.	ID=NCBI_GNO_4954;Parent=gene4954;flags=Start,Stop;paralog=Omcl1541,2;tilex=3401;ltr_region=Gypsy_39
scaffold_257	NCBI_GNO	mRNA	6115	7834	49.3563	-	.	ID=NCBI_GNO_62954;Parent=gene62954;flags=Start;tandy=td_s7c1g0;jgiov=DappuDraft_117723;tilex=10865;ltr_region=Gypsy_40
scaffold_26	NCBI_GNO	mRNA	111542	117838	52.011	-	.	ID=NCBI_GNO_60264;Parent=gene60264;flags=Start,Stop;tandy=td_s6c9g0;paralog=Omcl118,19;jgi=DappuDraft_318710;tilex=25392;ltr_region=Bel_4
scaffold_26	NCBI_GNO	mRNA	469361	474777	87.4124	+	.	ID=NCBI_GNO_208264;Parent=gene208264;flags=Start,Stop;paralog=Omcl3,90;jgi=DappuDraft_318789;tilex=2028;estov=WFes0105737;est_group=normal:Males-adult;ltr_region=Gypsy_8
scaffold_26	NCBI_GNO	mRNA	474952	475807	79.7955	+	.	ID=NCBI_GNO_210264;Parent=gene210264;flags=Start,Stop;paralog=Omcl564,5;jgi=DappuDraft_318790;ltr_region=Gypsy_8
scaffold_26	NCBI_GNO	mRNA	477191	477514	24.0554	+	.	ID=NCBI_GNO_212264;Parent=gene212264;flags=Start,Stop;tandy=td_s6c85g1;jgi=DappuDraft_243859;ltr_region=Gypsy_8
scaffold_26	NCBI_GNO	mRNA	894286	894882	35.4564	+	.	ID=NCBI_GNO_376264;Parent=gene376264;flags=Start,Stop;tandy=td_s6c128g2;jgiov=DappuDraft_243963;tilex=7032;ltr_region=Bel_15
scaffold_26	NCBI_GNO	mRNA	895789	902026	66.3251	+	.	ID=NCBI_GNO_378264;Parent=gene378264;flags=Start,Stop;tandy=td_s6c128g2;paralog=Omcl131,18;jgiov=DappuDraft_243964;tilex=27478;ltr_region=Bel_15
scaffold_26	NCBI_GNO	mRNA	911037	911471	15.4821	-	.	ID=NCBI_GNO_382264;Parent=gene382264;flags=Start,Stop;tandy=td_s6c131g0;paralog=Omcl7,80;jgiov=DappuDraft_103707;tilex=7860;ltr_region=Gypsy_24
scaffold_26	NCBI_GNO	mRNA	912185	913264	34.8486	-	.	ID=NCBI_GNO_384264;Parent=gene384264;flags=Start,Stop;paralog=Omcl3,90;jgiov=DappuDraft_103708;tilex=27974;estov=WFes0134865;est_group=inorganic:High_salinity;ltr_region=Gypsy_24
scaffold_26	NCBI_GNO	mRNA	975391	983399	57.6713	-	.	ID=NCBI_GNO_406264;Parent=gene406264;flags=Start,Stop;tandy=td_s6c138g0;paralog=Omcl131,18;jgi=DappuDraft_318898;tilex=8528;ltr_region=Bel_15
scaffold_26	NCBI_GNO	mRNA	1062565	1065191	43.3527	+	.	ID=NCBI_GNO_434264;Parent=gene434264;flags=Start,Stop;paralog=Omcl1034,3;jgi=DappuDraft_318912;tilex=22286;ltr_region=Copia_35
scaffold_26	NCBI_GNO	mRNA	1142555	1148506	122.046	-	.	ID=NCBI_GNO_448264;Parent=gene448264;Dbxref=ABE85098.1,ABE85618.1;flags=Prot,Start,Stop;protCDS=1144405 1147545;protein_hit=gi|92878509|gb|ABE85098.1|;tandy=td_s6c158g0;paralog=Omcl216,12;jgiov=DappuDraft_244034,DappuDraft_244035;tilex=5258;ltr_region=Copia_36
scaffold_260	NCBI_GNO	mRNA	50589	78615	119.83	-	.	ID=NCBI_GNO_136954;Parent=gene136954;flags=Start,Stop;tandy=td_scaffold_260c4g0;paralog=Omcl44,31;jgiov=DappuDraft_117752,DappuDraft_117753;tilex=24371;ltr_region=Copia_34
scaffold_27	NCBI_GNO	mRNA	412160	430148	121.597	-	.	ID=NCBI_GNO_80274;Parent=gene80274;Dbxref=ABE87439.1,ABE80010.1;flags=Prot,Start,Stop;protCDS=426689 428110;protein_hit=gi|92884640|gb|ABE87439.1|;pstop=426962 426964;tandy=td_s7c35g1;paralog=Omcl44,31;jgiov=DappuDraft_244135,DappuDraft_244136;Note=Q1RVB5_MEDTR/Q1RVB5/Medicago truncatula/Peptidase, cysteine peptidase active site,Zinc finger, CCHC-type,Peptidase aspartic, catalytic,Polynucleotidyl transferase, Ribonuclease H fold;Ontology_term=GO:0003677/F:DNA binding,GO:0016740/F:transferase activity,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve,Pfam:PF07727/RVT_2,Pfam:PF00098/zf-CCHC;tilex=23023;estov=WFes0152920;est_group=metal:Low_mixed_metals;ltr_region=Copia_9
scaffold_27	NCBI_GNO	mRNA	431168	431627	29.6906	-	.	ID=NCBI_GNO_82274;Parent=gene82274;flags=Start,Stop;jgi=DappuDraft_318972;tilex=7889;ltr_region=Copia_9
scaffold_27	NCBI_GNO	mRNA	439521	496513	83.0533	+	.	ID=NCBI_GNO_88274;Parent=gene88274;flags=Start,Stop;tandy=td_s7c49g0;paralog=Omcl258,10;jgiov=DappuDraft_103797,DappuDraft_103798,DappuDraft_244147,DappuDraft_244148,DappuDraft_244149,DappuDraft_244150,DappuDraft_244152,DappuDraft_244155,DappuDraft_51732;tilex=39126;ltr_region=Copia_19
scaffold_27	NCBI_GNO	mRNA	1182688	1205277	230.583	-	.	ID=NCBI_GNO_318274;Parent=gene318274;Dbxref=CAJ00233.1;flags=Prot,Start,Stop;protCDS=1199458 1200342;pstop=1199776 1199778;tandy=td_s7c188g0;paralog=Omcl147,17;jgiov=DappuDraft_244306,DappuDraft_244307,DappuDraft_244309,DappuDraft_244312;Note=Q4QQF1_SCHMA/Q4QQF1/Schistosoma mansoni/Gag-pol polyprotein;Ontology_term=GO:0003677/F:DNA binding,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve;tilex=51241;modpr=WB:WBGene00020186,WB:WBGene00020731;ltr_region=Gypsy_30
scaffold_270	NCBI_GNO	mRNA	20148	50736	53.1917	-	.	ID=NCBI_GNO_112964;Parent=gene112964;flags=Start,Stop;tandy=td_scaffold_270c2g0;paralog=Omcl9,67;jgiov=DappuDraft_117855;tilex=33091;ltr_region=Gypsy_42
scaffold_270	NCBI_GNO	mRNA	52204	53298	36.2188	-	.	ID=NCBI_GNO_114964;Parent=gene114964;flags=Start,Stop;tandy=td_scaffold_270c2g0;paralog=Omcl9,67;jgi=DappuDraft_117856;tilex=37962;ltr_region=Gypsy_42
scaffold_271	NCBI_GNO	mRNA	108197	109985	45.5248	-	.	ID=NCBI_GNO_128964;Parent=gene128964;flags=Start,Stop;tandy=td_s1c11g1;paralog=Omcl1574,2;jgiov=DappuDraft_65920;tilex=4126;ltr_region=Copia_29
scaffold_272	NCBI_GNO	mRNA	25934	34168	40.0368	+	.	ID=NCBI_GNO_142964;Parent=gene142964;flags=Start,Stop;tandy=td_s2c1g0;jgiov=DappuDraft_65922;tilex=44298;ltr_region=Copia_35
scaffold_281	NCBI_GNO	mRNA	54937	55836	32.8744	-	.	ID=NCBI_GNO_74974;Parent=gene74974;flags=Start,Stop;paralog=Omcl130,18;jgiov=DappuDraft_265952;tilex=29931;ltr_region=Bel_16
scaffold_288	NCBI_GNO	mRNA	25850	27874	43.4023	-	.	ID=NCBI_GNO_184974;Parent=gene184974;flags=Start,Stop;tandy=td_s8c1g0;paralog=Omcl7,80;jgiov=DappuDraft_118008;ltr_region=Gypsy_13
scaffold_289	NCBI_GNO	mRNA	4482	5930	37.9108	-	.	ID=NCBI_GNO_6984;Parent=gene6984;flags=Start,Stop;paralog=Omcl615,5;ltr_region=Bel_21
scaffold_290	NCBI_GNO	mRNA	50229	50849	21.9726	+	.	ID=NCBI_GNO_46984;Parent=gene46984;flags=Start,Stop;paralog=Omcl1398,2;jgi=DappuDraft_118028;ltr_region=Bel_22
scaffold_290	NCBI_GNO	mRNA	54016	55647	58.62	+	.	ID=NCBI_GNO_48984;Parent=gene48984;flags=Start,Stop;tandy=td_scaffold_290c8g0;paralog=Omcl904,3;tilex=9833;ltr_region=Bel_22
scaffold_30	NCBI_GNO	mRNA	954807	955442	26.0092	-	.	ID=NCBI_GNO_292304;Parent=gene292304;flags=Start,Stop;tandy=td_scaffold_30c87g0;paralog=Omcl147,17;ltr_region=Gypsy_30
scaffold_30	NCBI_GNO	mRNA	1094817	1102070	52.4963	-	.	ID=NCBI_GNO_338304;Parent=gene338304;flags=Start,Stop;tandy=td_scaffold_30c113g2;paralog=Omcl1266,3;jgiov=DappuDraft_245077;tilex=4395;ltr_region=Bel_23
scaffold_309	NCBI_GNO	mRNA	24486	24665	17.4003	-	.	ID=NCBI_GNO_94994;Parent=gene94994;flags=Start,Stop;jgiov=DappuDraft_266362;tilex=648;ltr_region=Gypsy_17
scaffold_309	NCBI_GNO	mRNA	26015	27484	44.4493	+	.	ID=NCBI_GNO_96994;Parent=gene96994;flags=Start,Stop;paralog=Omcl3,90;jgiov=DappuDraft_118161;tilex=1236;ltr_region=Gypsy_17
scaffold_309	NCBI_GNO	mRNA	45878	46738	50.4917	-	.	ID=NCBI_GNO_102994;Parent=gene102994;flags=Start,Stop;paralog=Omcl1378,2;jgiov=DappuDraft_14848;ltr_region=Bel_3
scaffold_317	NCBI_GNO	mRNA	81917	82249	18.3241	+	.	ID=NCBI_GNO_31004;Parent=gene31004;flags=Start,Stop;paralog=Omcl1088,3;jgi=DappuDraft_334221;tilex=934;ltr_region=Copia_37
scaffold_324	NCBI_GNO	mRNA	41537	42313	23.7843	+	.	ID=NCBI_GNO_139004;Parent=gene139004;flags=Start,Stop;tandy=td_s4c1g2;paralog=Omcl130,18;jgi=DappuDraft_334275;ltr_region=Bel_16
scaffold_33	NCBI_GNO	mRNA	171416	171841	22.9935	+	.	ID=NCBI_GNO_68334;Parent=gene68334;flags=Start,Stop;jgiov=DappuDraft_245546;tilex=1228;ltr_region=Gypsy_34
scaffold_33	NCBI_GNO	mRNA	172736	173029	28.0171	+	.	ID=NCBI_GNO_70334;Parent=gene70334;flags=Start,Stop;tilex=681;ltr_region=Gypsy_34
scaffold_33	NCBI_GNO	mRNA	173710	175739	137.995	-	.	ID=NCBI_GNO_72334;Parent=gene72334;flags=Start,Stop;paralog=Omcl422,7;jgi=DappuDraft_320012;tilex=1004;ltr_region=Gypsy_34
scaffold_33	NCBI_GNO	mRNA	440789	440968	16.7741	-	.	ID=NCBI_GNO_138334;Parent=gene138334;flags=Start,Stop;jgi=DappuDraft_320049;ltr_region=Gypsy_47
scaffold_33	NCBI_GNO	mRNA	441152	441520	33.2471	-	.	ID=NCBI_GNO_140334;Parent=gene140334;flags=Start,Stop;paralog=Omcl449,6;jgi=DappuDraft_320050;tilex=744;ltr_region=Gypsy_47
scaffold_33	NCBI_GNO	mRNA	441734	442075	16.4805	-	.	ID=NCBI_GNO_142334;Parent=gene142334;flags=Start,Stop;tandy=td_s3c34g0;paralog=Omcl1,95;jgi=DappuDraft_320051;ltr_region=Gypsy_47
scaffold_33	NCBI_GNO	mRNA	442233	442829	32.273	-	.	ID=NCBI_GNO_144334;Parent=gene144334;flags=Start,Stop;tandy=td_s3c34g0;paralog=Omcl1,95;jgi=DappuDraft_320052;tilex=966;ltr_region=Gypsy_47
scaffold_33	NCBI_GNO	mRNA	443613	444110	23.2306	-	.	ID=NCBI_GNO_146334;Parent=gene146334;flags=Start,Stop;paralog=Omcl431,6;jgi=DappuDraft_320053;tilex=874;ltr_region=Gypsy_47
scaffold_33	NCBI_GNO	mRNA	447521	448273	32.8252	-	.	ID=NCBI_GNO_148334;Parent=gene148334;flags=Start,Stop;paralog=Omcl82,24;jgi=DappuDraft_320054;tilex=2318;ltr_region=Gypsy_47
scaffold_33	NCBI_GNO	mRNA	450631	454238	-50.116	-	.	ID=NCBI_GNO_150334;Parent=gene150334;Dbxref=CAH66314.1;flags=Prot,Start,Stop;protCDS=451339 452901;pstop=451926 451928,452396 452398,452866 452868;paralog=Omcl52,29;jgiov=DappuDraft_245621,DappuDraft_245623;Note=Q01KQ1_ORYSA/Q01KQ1/Oryza sativa/OSIGBa0110B10.7 protein,OSIGBa0115J08.1 protein;Ontology_term=GO:0000785/C:chromatin,GO:0005634/C:nucleus,GO:0004190/F:aspartic-type endopeptidase activity,GO:0003682/F:chromatin binding,GO:0003723/F:RNA binding,GO:0003964/F:RNA-directed DNA polymerase activity,GO:0008270/F:zinc ion binding,GO:0006333/P:chromatin assembly or disassembly,GO:0006508/P:proteolysis,GO:0006278/P:RNA-dependent DNA replication,Pfam:PF00385/Chromo,Pfam:PF03732/Retrotrans_gag,Pfam:PF00665/rve,Pfam:PF08284/RVP_2,Pfam:PF00078/RVT_1,Pfam:PF00098/zf-CCHC;tilex=5598;ltr_region=Gypsy_47
scaffold_33	NCBI_GNO	mRNA	725814	733504	57.9167	-	.	ID=NCBI_GNO_258334;Parent=gene258334;flags=Start,Stop;paralog=Omcl399,7;jgi=DappuDraft_320110;tilex=1410;ltr_region=Bel_25
scaffold_34	NCBI_GNO	mRNA	250461	257514	115.494	-	.	ID=NCBI_GNO_430334;Parent=gene430334;flags=Start,Stop;paralog=Omcl172,14;jgiov=DappuDraft_245833;tilex=4105;ltr_region=Copia_3
scaffold_34	NCBI_GNO	mRNA	530751	542019	128.518	-	.	ID=NCBI_GNO_516334;Parent=gene516334;flags=Start,Stop;tandy=td_s4c65g0;paralog=Omcl118,19;jgiov=DappuDraft_245911,DappuDraft_245913;tilex=2264;ltr_region=Bel_4
scaffold_34	NCBI_GNO	mRNA	560893	567774	50.1283	-	.	ID=NCBI_GNO_522334;Parent=gene522334;flags=Start,Stop;tandy=td_s4c69g0;paralog=Omcl102,21;jgiov=DappuDraft_105059;tilex=949;ltr_region=Gypsy_48
scaffold_34	NCBI_GNO	mRNA	705840	708317	-14.1113	+	.	ID=NCBI_GNO_566334;Parent=gene566334;Dbxref=ABE87439.1,AAR13298.1;flags=Prot,Start,Stop;protCDS=705864 708089;protein_hit=gi|92884640|gb|ABE87439.1|;paralog=Omcl44,31;Note=Q1RVB5_MEDTR/Q1RVB5/Medicago truncatula/Peptidase, cysteine peptidase active site,Zinc finger, CCHC-type,Peptidase aspartic, catalytic,Polynucleotidyl transferase, Ribonuclease H fold;Ontology_term=GO:0003677/F:DNA binding,GO:0016740/F:transferase activity,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve,Pfam:PF07727/RVT_2,Pfam:PF00098/zf-CCHC;ltr_region=Copia_41
scaffold_34	NCBI_GNO	mRNA	708343	709641	54.5133	-	.	ID=NCBI_GNO_568334;Parent=gene568334;flags=Start,Stop;paralog=Omcl1743,2;jgi=DappuDraft_320268;tilex=3009;ltr_region=Copia_41
scaffold_34	NCBI_GNO	mRNA	710344	716445	16.5246	+	.	ID=NCBI_GNO_570334;Parent=gene570334;Dbxref=AAR13298.1;flags=Prot,Start,Stop;protCDS=712840 715176;paralog=Omcl216,12;jgiov=DappuDraft_245966,DappuDraft_245967;Note=Q69FA4_PHAVU/Q69FA4/Phaseolus vulgaris/Gag-pol polyprotein;Ontology_term=GO:0003677/F:DNA binding,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve,Pfam:PF07727/RVT_2,Pfam:PF00098/zf-CCHC;tilex=654;ltr_region=Copia_36
scaffold_34	NCBI_GNO	mRNA	937805	938443	51.6061	+	.	ID=NCBI_GNO_656334;Parent=gene656334;flags=Start,Stop;paralog=Omcl465,6;jgi=DappuDraft_246032;estov=WFes0159769;est_group=metal:Low_m_arsenic_III;ltr_region=Bel_11
scaffold_340	NCBI_GNO	mRNA	78866	79486	24.8742	+	.	ID=NCBI_GNO_163014;Parent=gene163014;flags=Start,Stop;paralog=Omcl69,26;jgi=DappuDraft_266718;ltr_region=Gypsy_41
scaffold_35	NCBI_GNO	mRNA	411722	416458	113.171	-	.	ID=NCBI_GNO_158344;Parent=gene158344;Dbxref=ABE89518.1;flags=Prot,Start,Stop;protCDS=414845 416156;paralog=Omcl360,7;Note=Q1S9K1_MEDTR/Q1S9K1/Medicago truncatula/Integrase, catalytic region,Zinc finger, CCHC-type,Peptidase aspartic, catalytic;Ontology_term=GO:0003677/F:DNA binding,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve,Pfam:PF00098/zf-CCHC;tilex=19635;modpr=WB:WBGene00018775;ltr_region=Copia_42
scaffold_35	NCBI_GNO	mRNA	649322	650747	70.6447	+	.	ID=NCBI_GNO_244344;Parent=gene244344;flags=Start,Stop;tandy=td_s5c66g0;paralog=Omcl10,66;jgi=DappuDraft_320461;tilex=736;ltr_region=Bel_12
scaffold_35	NCBI_GNO	mRNA	675007	690170	58.1462	-	.	ID=NCBI_GNO_252344;Parent=gene252344;Dbxref=CAB53471.1;flags=Prot,Start,Stop;protCDS=688701 689165;tandy=td_s5c67g2;paralog=Omcl71,26;jgiov=DappuDraft_246230,DappuDraft_246231;Note=Q9U5P0_LAMFL/Q9U5P0/Lampetra fluviatilis/Polymerase polyprotein;Ontology_term=GO:0008233/F:peptidase activity,GO:0003723/F:RNA binding,GO:0003964/F:RNA-directed DNA polymerase activity,GO:0006278/P:RNA-dependent DNA replication,Pfam:PF00078/RVT_1;tilex=2138;ltr_region=Gypsy_34
scaffold_35	NCBI_GNO	mRNA	690182	691255	40.0763	-	.	ID=NCBI_GNO_254344;Parent=gene254344;flags=Start,Stop;paralog=Omcl71,26;jgi=DappuDraft_320466;tilex=1746;ltr_region=Gypsy_34
scaffold_35	NCBI_GNO	mRNA	975330	984743	152.428	-	.	ID=NCBI_GNO_320344;Parent=gene320344;Dbxref=AAR13298.1;flags=Prot,Start,Stop;protCDS=975459 977547;tandy=td_s5c91g2;paralog=Omcl569,5;jgiov=DappuDraft_105289,DappuDraft_105290,DappuDraft_246292;Note=Q69FA4_PHAVU/Q69FA4/Phaseolus vulgaris/Gag-pol polyprotein;Ontology_term=GO:0003677/F:DNA binding,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve,Pfam:PF07727/RVT_2,Pfam:PF00098/zf-CCHC;tilex=2112;ltr_region=Copia_43
scaffold_37	NCBI_GNO	mRNA	22687	23165	31.2567	-	.	ID=NCBI_GNO_4354;Parent=gene4354;flags=Start,Stop;paralog=Omcl675,4;jgiov=DappuDraft_246653;tilex=593;ltr_region=Bel_13
scaffold_37	NCBI_GNO	mRNA	89077	90117	20.2199	-	.	ID=NCBI_GNO_18354;Parent=gene18354;flags=Start,Stop;tandy=td_s7c10g0;jgi=DappuDraft_320766;tilex=867;ltr_region=Gypsy_49
scaffold_37	NCBI_GNO	mRNA	93404	93967	17.3065	-	.	ID=NCBI_GNO_20354;Parent=gene20354;flags=Start,Stop;tandy=td_s7c10g0;jgiov=DappuDraft_105541;tilex=1243;ltr_region=Gypsy_49
scaffold_37	NCBI_GNO	mRNA	505031	506164	37.0953	-	.	ID=NCBI_GNO_198354;Parent=gene198354;flags=Start,Stop;paralog=Omcl48,29;jgiov=DappuDraft_105615;ltr_region=Gypsy_32
scaffold_37	NCBI_GNO	mRNA	509471	509836	15.9588	+	.	ID=NCBI_GNO_200354;Parent=gene200354;flags=Start,Stop;jgiov=DappuDraft_246809;ltr_region=Gypsy_32
scaffold_37	NCBI_GNO	mRNA	509855	510219	29.8186	+	.	ID=NCBI_GNO_202354;Parent=gene202354;flags=Start,Stop;jgiov=DappuDraft_246809,DappuDraft_246810;tilex=606;ltr_region=Gypsy_32
scaffold_37	NCBI_GNO	mRNA	511102	511938	31.3311	-	.	ID=NCBI_GNO_204354;Parent=gene204354;flags=Start,Stop;paralog=Omcl48,29;jgiov=DappuDraft_246810;tilex=679;ltr_region=Gypsy_32
scaffold_37	NCBI_GNO	mRNA	802976	803497	14.9371	-	.	ID=NCBI_GNO_280354;Parent=gene280354;flags=Start,Stop;paralog=Omcl1,95;jgiov=DappuDraft_105644;tilex=1815;ltr_region=Gypsy_50
scaffold_37	NCBI_GNO	mRNA	804774	805346	22.9138	-	.	ID=NCBI_GNO_282354;Parent=gene282354;flags=Start,Stop;jgiov=DappuDraft_105645;tilex=1296;ltr_region=Gypsy_50
scaffold_37	NCBI_GNO	mRNA	805351	806082	16.2114	-	.	ID=NCBI_GNO_284354;Parent=gene284354;flags=Start,Stop;paralog=Omcl9,67;jgiov=DappuDraft_105645;tilex=1243;ltr_region=Gypsy_50
scaffold_37	NCBI_GNO	mRNA	809793	810401	18.85	-	.	ID=NCBI_GNO_286354;Parent=gene286354;flags=Start,Stop;paralog=Omcl9,67;jgi=DappuDraft_320900;tilex=2695;ltr_region=Gypsy_50
scaffold_37	NCBI_GNO	mRNA	840473	844927	61.6979	-	.	ID=NCBI_GNO_304354;Parent=gene304354;flags=Start,Stop;tandy=td_s7c116g0;paralog=Omcl615,5;tilex=745;estov=WFes0143402,WFes0143403;est_group=biotic:Bacterial_infection;ltr_region=Bel_21
scaffold_37	NCBI_GNO	mRNA	849286	906370	460.165	-	.	ID=NCBI_GNO_306354;Parent=gene306354;Dbxref=NP_725507.1,NP_001012418.1,NP_001074513.1,NP_001339.1,NP_004217.1,NP_004751.2,NP_031854.1,NP_034149.2,NP_055141.2,NP_149109.1,NP_523754.2,NP_524622.1,NP_725508.1,NP_725509.1,NP_726573.1,NP_780650.2,NP_872299.2;flags=EST,Prot,Start,Stop;protCDS=868215 874762;protein_hit=gi|24653968|ref|NP_725507.1|;tandy=td_s7c116g1;paralog=Omcl104,21;jgiov=DappuDraft_105663,DappuDraft_246892,DappuDraft_246894,DappuDraft_305289,DappuDraft_53743;Note=A1ZA67_DROME/A1ZA67/Drosophila melanogaster/CG18255-PC, isoform C;Ontology_term=GO:0005524/F:ATP binding,GO:0004674/F:protein serine/threonine kinase activity,GO:0006468/P:protein amino acid phosphorylation,Pfam:PF00041/fn3,Pfam:PF07679/I-set,Pfam:PF00047/ig,Pfam:PF00069/Pkinase;tilex=35402;estov=WFes0101211,WFes0101212;modpr=FB:CG18255,MGI:1919583;est_group=normal:Females-adult;ltr_region=Bel_21
scaffold_379	NCBI_GNO	mRNA	37871	41327	41.7298	-	.	ID=NCBI_GNO_9044;Parent=gene9044;Dbxref=AAM12303.1;flags=Prot,Start,Stop;protCDS=38841 40523;paralog=Omcl3,90;jgiov=DappuDraft_118591;Note=Q8S6Z2_ORYSJ/Q8S6Z2/Oryza sativa subsp. japonica/Putative polyprotein;Ontology_term=GO:0004190/F:aspartic-type endopeptidase activity,GO:0003677/F:DNA binding,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,GO:0006508/P:proteolysis,Pfam:PF03732/Retrotrans_gag,Pfam:PF00665/rve,Pfam:PF08284/RVP_2,Pfam:PF00078/RVT_1,Pfam:PF00098/zf-CCHC;modpr=MGI:2182036;ltr_region=Gypsy_8
scaffold_38	NCBI_GNO	mRNA	97840	98577	32.0324	-	.	ID=NCBI_GNO_396354;Parent=gene396354;flags=Start,Stop;tandy=td_s8c12g0;jgi=DappuDraft_320938;tilex=1447;ltr_region=Gypsy_3
scaffold_38	NCBI_GNO	mRNA	246979	260561	152.697	-	.	ID=NCBI_GNO_424354;Parent=gene424354;Dbxref=BJ932365.1,BJ932366.1;flags=EST,Start,Stop;tandy=td_s8c22g0;jgiov=DappuDraft_105705,DappuDraft_105706,DappuDraft_246987;tilex=1577;estov=WFes0008087,WFes0008088;ltr_region=Copia_32
scaffold_38	NCBI_GNO	mRNA	758979	769181	53.6259	+	.	ID=NCBI_GNO_600354;Parent=gene600354;flags=Start,Stop;paralog=Omcl204,13;jgi=DappuDraft_321050;tilex=1980;ltr_region=Gypsy_48
scaffold_391	NCBI_GNO	mRNA	21154	42266	53.5591	+	.	ID=NCBI_GNO_121044;Parent=gene121044;flags=Start,Stop;tandy=td_s1c1g1;paralog=Omcl377,7;jgiov=DappuDraft_118631,DappuDraft_267252,DappuDraft_267257,DappuDraft_66538;tilex=5105;ltr_region=Bel_26
scaffold_40	NCBI_GNO	mRNA	856886	875629	53.7428	-	.	ID=NCBI_GNO_644364;Parent=gene644364;flags=Start,Stop;tandy=td_scaffold_40c84g0;paralog=Omcl278,9;jgiov=DappuDraft_106129,DappuDraft_213444,DappuDraft_247629;tilex=4049;estov=WFes0065520,WFes0117211,WFes0117212;est_group=metal:Low_nickel,metal:Low_zinc;ltr_region=Bel_20
scaffold_40	NCBI_GNO	mRNA	920187	920372	19.0011	+	.	ID=NCBI_GNO_660364;Parent=gene660364;flags=Start,Stop;jgi=DappuDraft_321428;ltr_region=Copia_11
scaffold_40	NCBI_GNO	mRNA	922794	926233	52.524	+	.	ID=NCBI_GNO_662364;Parent=gene662364;flags=Start,Stop;paralog=Omcl1646,2;jgi=DappuDraft_321429;tilex=19263;ltr_region=Copia_11
scaffold_41	NCBI_GNO	mRNA	661310	668690	44.7009	-	.	ID=NCBI_GNO_232374;Parent=gene232374;flags=Start,Stop;tandy=td_s1c49g3;paralog=Omcl50,29;jgiov=DappuDraft_106236;tilex=1513;ltr_region=Copia_44
scaffold_41	NCBI_GNO	mRNA	860516	861685	52.0738	-	.	ID=NCBI_GNO_294374;Parent=gene294374;flags=Start,Stop;jgi=DappuDraft_321592;tilex=1023;ltr_region=Copia_18
scaffold_41	NCBI_GNO	mRNA	861690	863335	69.7031	-	.	ID=NCBI_GNO_296374;Parent=gene296374;flags=Start,Stop;tandy=td_s1c79g1;jgi=DappuDraft_321593;tilex=1023;ltr_region=Copia_18
scaffold_44	NCBI_GNO	mRNA	150862	153320	45.7705	+	.	ID=NCBI_GNO_336384;Parent=gene336384;flags=Start,Stop;tandy=td_s4c8g4;paralog=Omcl9,67;jgi=DappuDraft_106651;ltr_region=Gypsy_11
scaffold_44	NCBI_GNO	mRNA	157399	158898	50.6204	+	.	ID=NCBI_GNO_338384;Parent=gene338384;flags=Start,Stop;tandy=td_s4c8g4;paralog=Omcl1,95;jgiov=DappuDraft_106652;tilex=692;ltr_region=Gypsy_11
scaffold_44	NCBI_GNO	mRNA	170883	187877	69.8253	+	.	ID=NCBI_GNO_340384;Parent=gene340384;flags=Start,Stop;tandy=td_s4c15g1;paralog=Omcl118,19;jgi=DappuDraft_321939;tilex=8673;ltr_region=Bel_4
scaffold_44	NCBI_GNO	mRNA	489291	495845	78.575	-	.	ID=NCBI_GNO_434384;Parent=gene434384;flags=Start,Stop;tandy=td_s4c34g0;jgiov=DappuDraft_106696,DappuDraft_248505;tilex=2083;ltr_region=Copia_45
scaffold_44	NCBI_GNO	mRNA	906811	928649	76.7058	-	.	ID=NCBI_GNO_572384;Parent=gene572384;flags=Start,Stop;tandy=td_s4c73g0;paralog=Omcl537,5;jgiov=DappuDraft_106748;tilex=3160;estov=WFes0127142;est_group=inorganic:Acid_stress;ltr_region=Gypsy_3
scaffold_44	NCBI_GNO	mRNA	993443	998264	54.1684	-	.	ID=NCBI_GNO_600384;Parent=gene600384;flags=Start,Stop;tandy=td_s4c83g3;paralog=Omcl529,5;jgiov=DappuDraft_106757,DappuDraft_106758;tilex=18880;ltr_region=Copia_1
scaffold_45	NCBI_GNO	mRNA	207828	221602	47.2374	+	.	ID=NCBI_GNO_100394;Parent=gene100394;flags=Start,Stop;tandy=td_s5c11g1;paralog=Omcl278,9;jgi=DappuDraft_322125;tilex=1638;estov=WFes0133036;est_group=inorganic:High_salinity;ltr_region=Bel_20
scaffold_45	NCBI_GNO	mRNA	221681	702287	31.5273	-	.	ID=NCBI_GNO_188394;Parent=gene188394;Dbxref=CAJ83699.1,WFes0172529;flags=Prot,EST,Start,Stop,Frameshifts;maxCDS=221681 702287;protein_hit=gi|89272119|emb|CAJ83699.1|;tandy=td_s5c18g0;paralog=Omcl381,7;jgiov=DappuDraft_106812,DappuDraft_106816,DappuDraft_106817,DappuDraft_106818,DappuDraft_106819,DappuDraft_106820,DappuDraft_106824,DappuDraft_106826,DappuDraft_106828,DappuDraft_106829,DappuDraft_106830,DappuDraft_106832,DappuDraft_106834,DappuDraft_106838,DappuDraft_106850,DappuDraft_106854,DappuDraft_106860,DappuDraft_106861,DappuDraft_106864,DappuDraft_106867,DappuDraft_106875,DappuDraft_106876,DappuDraft_106877,DappuDraft_106881,DappuDraft_198836,DappuDraft_198851,DappuDraft_213873,DappuDraft_213883,DappuDraft_225993,DappuDraft_248678,DappuDraft_248682,DappuDraft_248684,DappuDraft_248685,DappuDraft_248686,DappuDraft_248687,DappuDraft_248689,DappuDraft_248698,DappuDraft_248699,DappuDraft_248706,DappuDraft_248708,DappuDraft_248709,DappuDraft_248714,DappuDraft_248715,DappuDraft_248722,DappuDraft_248724,DappuDraft_248725,DappuDraft_248728,DappuDraft_248746,DappuDraft_248750,DappuDraft_248756,DappuDraft_248758,DappuDraft_248769,DappuDraft_248773,DappuDraft_248782,DappuDraft_248788,DappuDraft_248789,DappuDraft_248795,DappuDraft_248799,DappuDraft_248801,DappuDraft_248804,DappuDraft_248805,DappuDraft_248809,DappuDraft_248810,DappuDraft_26173,DappuDraft_27153,DappuDraft_27173,DappuDraft_306099,DappuDraft_306103,DappuDraft_306107,DappuDraft_306109,DappuDraft_306110,DappuDraft_306111,DappuDraft_322139,DappuDraft_322145,DappuDraft_322147,DappuDraft_322149,DappuDraft_322150,DappuDraft_322151,DappuDraft_322156,DappuDraft_322157,DappuDraft_322158,DappuDraft_322164,DappuDraft_322171,DappuDraft_322176,DappuDraft_322179,DappuDraft_322181,DappuDraft_322193,DappuDraft_322194,DappuDraft_322199,DappuDraft_322203,DappuDraft_322204,DappuDraft_322206,DappuDraft_322210,DappuDraft_322219,DappuDraft_322220,DappuDraft_322224,DappuDraft_35725,DappuDraft_36790,DappuDraft_36793,DappuDraft_54920,DappuDraft_54980,DappuDraft_54984,DappuDraft_54989,DappuDraft_6634;Note=Q28HZ7_XENTR/Q28HZ7/Xenopus tropicalis/BMS1-like, ribosome assembly protein,Yeast;Ontology_term=Pfam:PF08142/AARP2CN;tilex=46776;estov=WFes0152089,WFes0152090;est_group=biotic:Microcystis_fed,metal:High_mixed_metals;ltr_region=Bel_6,Copia_10
scaffold_45	NCBI_GNO	mRNA	251853	257738	93.336	+	.	ID=NCBI_GNO_102394;Parent=gene102394;flags=Start,Stop;paralog=Omcl912,3;jgiov=DappuDraft_248685,DappuDraft_248686,DappuDraft_248687;tilex=1966;ltr_region=Copia_10
scaffold_45	NCBI_GNO	mRNA	257862	258101	22.675	+	.	ID=NCBI_GNO_104394;Parent=gene104394;flags=Start,Stop;jgi=DappuDraft_248689;ltr_region=Copia_10
scaffold_45	NCBI_GNO	mRNA	383900	395182	53.7852	+	.	ID=NCBI_GNO_132394;Parent=gene132394;flags=Start,Stop;tandy=td_s5c45g7;paralog=Omcl733,4;jgiov=DappuDraft_248722,DappuDraft_248724;tilex=4254;modpr=MGI:1924066;ltr_region=Bel_6
scaffold_45	NCBI_GNO	mRNA	782739	797823	95.1309	-	.	ID=NCBI_GNO_300394;Parent=gene300394;flags=Start,Stop;tandy=td_s5c104g2;paralog=Omcl422,7;jgi=DappuDraft_322231;tilex=2153;estov=WFes0057208,WFes0057209;est_group=metal:Low_arsenic;ltr_region=Copia_46
scaffold_45	NCBI_GNO	mRNA	798211	799977	125.212	+	.	ID=NCBI_GNO_302394;Parent=gene302394;flags=Start,Stop;tandy=td_s5c104g2;paralog=Omcl1680,2;jgiov=DappuDraft_106889;tilex=799;ltr_region=Copia_46
scaffold_48	NCBI_GNO	mRNA	546548	547597	28.54	-	.	ID=NCBI_GNO_454404;Parent=gene454404;flags=Start,Stop;paralog=Omcl293,9;jgi=DappuDraft_322618;tilex=708;ltr_region=Gypsy_54
scaffold_48	NCBI_GNO	mRNA	740373	753793	101.383	-	.	ID=NCBI_GNO_522404;Parent=gene522404;Dbxref=CAB53471.1;flags=Prot,Start,Stop;protCDS=752552 752896;tandy=td_s8c93g0;paralog=Omcl71,26;jgiov=DappuDraft_306296;Note=Q9U5P0_LAMFL/Q9U5P0/Lampetra fluviatilis/Polymerase polyprotein;Ontology_term=GO:0008233/F:peptidase activity,GO:0003723/F:RNA binding,GO:0003964/F:RNA-directed DNA polymerase activity,GO:0006278/P:RNA-dependent DNA replication,Pfam:PF00078/RVT_1;tilex=23083;estov=WFes0152104,WFes0152105;modpr=FB:CG3437;est_group=metal:High_mixed_metals;ltr_region=Gypsy_34
scaffold_48	NCBI_GNO	mRNA	753913	754986	28.2423	-	.	ID=NCBI_GNO_524404;Parent=gene524404;flags=Start,Stop;paralog=Omcl71,26;jgi=DappuDraft_322660;tilex=1891;ltr_region=Gypsy_34
scaffold_483	NCBI_GNO	mRNA	32846	41522	42.0789	+	.	ID=NCBI_GNO_47084;Parent=gene47084;flags=Start,Stop;tandy=td_s3c1g0;jgiov=DappuDraft_118886,DappuDraft_118887;tilex=976;ltr_region=Copia_8
scaffold_49	NCBI_GNO	mRNA	699287	700024	27.8674	-	.	ID=NCBI_GNO_240414;Parent=gene240414;flags=Start,Stop;paralog=Omcl2110,2;jgi=DappuDraft_322806;tilex=6073;ltr_region=Gypsy_37
scaffold_49	NCBI_GNO	mRNA	702468	704156	35.569	-	.	ID=NCBI_GNO_242414;Parent=gene242414;flags=Start,Stop;paralog=Omcl60,27;jgi=DappuDraft_322807;tilex=881;ltr_region=Gypsy_37
scaffold_49	NCBI_GNO	mRNA	704630	710379	93.7272	-	.	ID=NCBI_GNO_244414;Parent=gene244414;flags=Start,Stop;paralog=Omcl21,46;jgiov=DappuDraft_249618;tilex=5387;modpr=MGI:1277201,WB:WBGene00000608,WB:WBGene00000631,WB:WBGene00000636,WB:WBGene00000652,WB:WBGene00000687,WB:WBGene00001067,WB:WBGene00004398;ltr_region=Gypsy_37
scaffold_49	NCBI_GNO	mRNA	710618	713549	93.0546	+	.	ID=NCBI_GNO_246414;Parent=gene246414;flags=Start,Stop;tandy=td_s9c77g1;paralog=Omcl0,162;jgiov=DappuDraft_249619;tilex=6752;estov=WFes0048489,WFes0053927,WFes0056902,WFes0056903,WFes0112752,WFes0148259;est_group=biotic:Bacterial_infection,inorganic:Hypoxia-juvenile,metal:Low_arsenic,metal:Low_nickel;ltr_region=Gypsy_37
scaffold_5	NCBI_GNO	mRNA	2356956	2361814	86.6935	+	.	ID=NCBI_GNO_688054;Parent=gene688054;flags=Start,Stop;tandy=td_s5c194g1;paralog=Omcl71,26;tilex=65535;ltr_region=Gypsy_34
scaffold_50	NCBI_GNO	mRNA	13373	35880	133.765	-	.	ID=NCBI_GNO_310414;Parent=gene310414;flags=Start,Stop;tandy=td_scaffold_50c1g0;paralog=Omcl13,61;jgiov=DappuDraft_107437,DappuDraft_107438,DappuDraft_107439,DappuDraft_249662;tilex=8396;estov=WFes0005819,WFes0161301;est_group=metal:Low_m_arsenic_III;ltr_region=Copia_43
scaffold_50	NCBI_GNO	mRNA	501116	507673	72.2459	+	.	ID=NCBI_GNO_460414;Parent=gene460414;Dbxref=AAM12303.1;flags=EST,Prot,Start,Stop;protCDS=503600 507661;tandy=td_scaffold_50c45g2;paralog=Omcl3,90;jgiov=DappuDraft_107503,DappuDraft_107504;Note=Q8S6Z2_ORYSJ/Q8S6Z2/Oryza sativa subsp. japonica/Putative polyprotein;Ontology_term=GO:0004190/F:aspartic-type endopeptidase activity,GO:0003677/F:DNA binding,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,GO:0006508/P:proteolysis,Pfam:PF03732/Retrotrans_gag,Pfam:PF00665/rve,Pfam:PF08284/RVP_2,Pfam:PF00078/RVT_1,Pfam:PF00098/zf-CCHC;tilex=8055;estov=WFes0105736;modpr=S000002557;est_group=normal:Males-adult;ltr_region=Gypsy_8
scaffold_50	NCBI_GNO	mRNA	510343	515054	65.5628	-	.	ID=NCBI_GNO_462414;Parent=gene462414;Dbxref=CAK05210.1;flags=Prot,Start,Stop,Frameshifts;protCDS=511475 513626;tandy=td_scaffold_50c47g1;paralog=Omcl459,6;tilex=945;estov=WFes0144881;est_group=biotic:Bacterial_infection;ltr_region=Gypsy_25
scaffold_50	NCBI_GNO	mRNA	515070	515237	17.6567	-	.	ID=NCBI_GNO_464414;Parent=gene464414;flags=Start,Stop;jgi=DappuDraft_249796;tilex=580;ltr_region=Gypsy_25
scaffold_50	NCBI_GNO	mRNA	667158	689674	112.045	+	.	ID=NCBI_GNO_508414;Parent=gene508414;Dbxref=NP_001016935.1,NP_084205.2;flags=Prot,Start,Stop,Frameshifts;protCDS=688159 689424;tandy=td_scaffold_50c66g0;paralog=Omcl137,17;jgiov=DappuDraft_107523,DappuDraft_107524;Note=Q28F93_XENTR/Q28F93/Xenopus tropicalis/Vacuolar protein sorting 33A,Yeast;Ontology_term=GO:0006904/P:vesicle docking during exocytosis,Pfam:PF00995/Sec1;tilex=11313;ltr_region=Copia_15
scaffold_50	NCBI_GNO	mRNA	710140	710718	36.7844	+	.	ID=NCBI_GNO_512414;Parent=gene512414;flags=Start,Stop;jgi=DappuDraft_322943;tilex=802;ltr_region=Gypsy_55
scaffold_50	NCBI_GNO	mRNA	715147	716570	70.1887	-	.	ID=NCBI_GNO_514414;Parent=gene514414;flags=Start,Stop;tandy=td_scaffold_50c70g0;paralog=Omcl10,66;jgi=DappuDraft_322944;tilex=721;ltr_region=Gypsy_55
scaffold_50	NCBI_GNO	mRNA	854230	868447	1.45242	-	.	ID=NCBI_GNO_544414;Parent=gene544414;Dbxref=ABE87439.1;flags=Prot,Start,Stop;protCDS=866219 868432;protein_hit=gi|92884640|gb|ABE87439.1|;pstop=867359 867361;tandy=td_scaffold_50c93g0;paralog=Omcl44,31;jgiov=DappuDraft_107539;Note=Q1RVB5_MEDTR/Q1RVB5/Medicago truncatula/Peptidase, cysteine peptidase active site,Zinc finger, CCHC-type,Peptidase aspartic, catalytic,Polynucleotidyl transferase, Ribonuclease H fold;Ontology_term=GO:0003677/F:DNA binding,GO:0016740/F:transferase activity,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve,Pfam:PF07727/RVT_2,Pfam:PF00098/zf-CCHC;tilex=2149;ltr_region=Copia_47
scaffold_50	NCBI_GNO	mRNA	869373	870538	78.035	-	.	ID=NCBI_GNO_546414;Parent=gene546414;flags=Start,Stop;paralog=Omcl258,10;tilex=1571;ltr_region=Copia_47
scaffold_54	NCBI_GNO	mRNA	482343	482813	15.9851	-	.	ID=NCBI_GNO_488434;Parent=gene488434;flags=Start,Stop;paralog=Omcl288,9;jgiov=DappuDraft_250635;tilex=1509;ltr_region=Gypsy_8
scaffold_54	NCBI_GNO	mRNA	501292	506123	54.5301	-	.	ID=NCBI_GNO_498434;Parent=gene498434;flags=Start,Stop;tandy=td_s4c170g0;paralog=Omcl713,4;jgiov=DappuDraft_250638;tilex=1870;ltr_region=Gypsy_20
scaffold_54	NCBI_GNO	mRNA	636838	637284	35.0979	-	.	ID=NCBI_GNO_552434;Parent=gene552434;flags=Start,Stop;paralog=Omcl216,12;jgiov=DappuDraft_250680;tilex=592;ltr_region=Copia_48
scaffold_55	NCBI_GNO	mRNA	581132	592397	125.914	-	.	ID=NCBI_GNO_186444;Parent=gene186444;Dbxref=ABE85098.1;flags=Prot,Start,Stop;protCDS=581144 584659;paralog=Omcl44,31;jgiov=DappuDraft_108198;tilex=6365;ltr_region=Copia_13
scaffold_56	NCBI_GNO	mRNA	684694	685875	50.1619	+	.	ID=NCBI_GNO_392444;Parent=gene392444;flags=Start,Stop;tandy=td_s6c50g0;paralog=Omcl21,46;jgiov=DappuDraft_108301;modpr=WB:WBGene00000630;ltr_region=Gypsy_16
scaffold_57	NCBI_GNO	mRNA	46975	48480	63.4768	+	.	ID=NCBI_GNO_36454;Parent=gene36454;flags=Start,Stop;paralog=Omcl21,46;jgiov=DappuDraft_108329;modpr=MGI:1354734,WB:WBGene00000630;ltr_region=Gypsy_57
scaffold_57	NCBI_GNO	mRNA	54204	54983	28.8937	+	.	ID=NCBI_GNO_38454;Parent=gene38454;flags=Start,Stop;paralog=Omcl413,7;jgi=DappuDraft_323809;ltr_region=Gypsy_57
scaffold_57	NCBI_GNO	mRNA	55287	55826	30.5111	-	.	ID=NCBI_GNO_40454;Parent=gene40454;flags=Start,Stop;paralog=Omcl325,8;jgiov=DappuDraft_251157;ltr_region=Gypsy_57
scaffold_57	NCBI_GNO	mRNA	86767	99420	58.7934	+	.	ID=NCBI_GNO_50454;Parent=gene50454;flags=Start,Stop;tandy=td_s7c3g1;paralog=Omcl118,19;jgiov=DappuDraft_251164,DappuDraft_251165,DappuDraft_251167;tilex=2739;ltr_region=Bel_4
scaffold_57	NCBI_GNO	mRNA	226995	228851	29.1078	+	.	ID=NCBI_GNO_96454;Parent=gene96454;Dbxref=AAK51235.1;flags=Prot,Start,Stop;protCDS=227439 228833;paralog=Omcl44,31;Note=Q94KV0_ARATH/Q94KV0/Arabidopsis thaliana/Polyprotein;Ontology_term=GO:0003677/F:DNA binding,GO:0016787/F:hydrolase activity,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve,Pfam:PF07727/RVT_2;ltr_region=Copia_41
scaffold_57	NCBI_GNO	mRNA	256090	256766	41.8043	+	.	ID=NCBI_GNO_106454;Parent=gene106454;flags=Start,Stop;paralog=Omcl675,4;jgi=DappuDraft_323845;ltr_region=Bel_13
scaffold_57	NCBI_GNO	mRNA	257169	265576	60.2766	+	.	ID=NCBI_GNO_108454;Parent=gene108454;flags=Start,Stop;tandy=td_s7c14g2;paralog=Omcl230,11;jgi=DappuDraft_323846;tilex=1279;ltr_region=Bel_13,Copia_47
scaffold_57	NCBI_GNO	mRNA	265580	266744	81.1247	+	.	ID=NCBI_GNO_110454;Parent=gene110454;flags=Start,Stop;paralog=Omcl258,10;tilex=1441;ltr_region=Copia_47
scaffold_57	NCBI_GNO	mRNA	267324	276801	116.95	+	.	ID=NCBI_GNO_112454;Parent=gene112454;flags=Start,Stop;tandy=td_s7c15g0;paralog=Omcl44,31;jgiov=DappuDraft_108358,DappuDraft_251211;tilex=2214;ltr_region=Copia_47
scaffold_57	NCBI_GNO	mRNA	328893	337244	164.015	-	.	ID=NCBI_GNO_130454;Parent=gene130454;Dbxref=CAB53471.1;flags=Prot,Start,Stop;protCDS=335055 335525;tandy=td_s7c20g2;paralog=Omcl252,10;jgiov=DappuDraft_108370,DappuDraft_251228;Note=Q9U5P0_LAMFL/Q9U5P0/Lampetra fluviatilis/Polymerase polyprotein;Ontology_term=GO:0008233/F:peptidase activity,GO:0003723/F:RNA binding,GO:0003964/F:RNA-directed DNA polymerase activity,GO:0006278/P:RNA-dependent DNA replication,Pfam:PF00078/RVT_1;tilex=3201;estov=WFes0066176,WFes0148336;est_group=metal:High_mixed_metals,metal:Low_zinc;ltr_region=Copia_12
scaffold_57	NCBI_GNO	mRNA	563832	564152	23.6541	-	.	ID=NCBI_GNO_206454;Parent=gene206454;flags=Start,Stop;jgiov=DappuDraft_108408;tilex=791;ltr_region=Gypsy_2
scaffold_57	NCBI_GNO	mRNA	564774	565268	14.6709	-	.	ID=NCBI_GNO_208454;Parent=gene208454;flags=Start,Stop;paralog=Omcl33,36;tilex=3806;ltr_region=Gypsy_2
scaffold_57	NCBI_GNO	mRNA	566599	567030	25.7535	+	.	ID=NCBI_GNO_210454;Parent=gene210454;flags=Start,Stop;paralog=Omcl71,26;jgi=DappuDraft_323898;tilex=1411;ltr_region=Gypsy_42
scaffold_57	NCBI_GNO	mRNA	567892	571391	59.3762	+	.	ID=NCBI_GNO_212454;Parent=gene212454;flags=Start,Stop;tandy=td_s7c39g0;paralog=Omcl9,67;jgi=DappuDraft_108410;tilex=723;ltr_region=Gypsy_42
scaffold_57	NCBI_GNO	mRNA	576510	582538	57.2495	+	.	ID=NCBI_GNO_214454;Parent=gene214454;flags=Start,Stop;tandy=td_s7c39g1;paralog=Omcl1,95;jgiov=DappuDraft_108411,DappuDraft_251289;tilex=3159;ltr_region=Gypsy_42
scaffold_573	NCBI_GNO	mRNA	3262	10613	76.5552	-	.	ID=NCBI_GNO_99104;Parent=gene99104;flags=Start,Stop;paralog=Omcl48,29;jgiov=DappuDraft_119029;tilex=11940;ltr_region=Gypsy_32
scaffold_576	NCBI_GNO	mRNA	30145	32096	59.3934	+	.	ID=NCBI_GNO_7114;Parent=gene7114;flags=Start,Stop;paralog=Omcl52,29;jgiov=DappuDraft_268105;tilex=749;ltr_region=Gypsy_56
scaffold_576	NCBI_GNO	mRNA	32151	36298	14.209	+	.	ID=NCBI_GNO_9114;Parent=gene9114;Dbxref=CAH66314.1;flags=Prot,Start,Stop;protCDS=33075 34853;paralog=Omcl52,29;jgiov=DappuDraft_268106;Note=Q01KQ1_ORYSA/Q01KQ1/Oryza sativa/OSIGBa0110B10.7 protein,OSIGBa0115J08.1 protein;Ontology_term=GO:0000785/C:chromatin,GO:0005634/C:nucleus,GO:0004190/F:aspartic-type endopeptidase activity,GO:0003682/F:chromatin binding,GO:0003723/F:RNA binding,GO:0003964/F:RNA-directed DNA polymerase activity,GO:0008270/F:zinc ion binding,GO:0006333/P:chromatin assembly or disassembly,GO:0006508/P:proteolysis,GO:0006278/P:RNA-dependent DNA replication,Pfam:PF00385/Chromo,Pfam:PF03732/Retrotrans_gag,Pfam:PF00665/rve,Pfam:PF08284/RVP_2,Pfam:PF00078/RVT_1,Pfam:PF00098/zf-CCHC;tilex=905;ltr_region=Gypsy_56
scaffold_576	NCBI_GNO	mRNA	37382	38590	28.9534	+	.	ID=NCBI_GNO_11114;Parent=gene11114;flags=Start,Stop;paralog=Omcl1,95;jgi=DappuDraft_335255;ltr_region=Gypsy_56
scaffold_581	NCBI_GNO	mRNA	5660	6232	18.7464	+	.	ID=NCBI_GNO_51114;Parent=gene51114;flags=Start,Stop;paralog=Omcl713,4;jgiov=DappuDraft_119063;ltr_region=Gypsy_20
scaffold_597	NCBI_GNO	mRNA	10361	11696	39.4389	+	.	ID=NCBI_GNO_143114;Parent=gene143114;flags=Start,Stop;tandy=td_s7c1g0;paralog=Omcl9,67;jgiov=DappuDraft_119103;tilex=789;ltr_region=Gypsy_11
scaffold_611	NCBI_GNO	mRNA	3337	4245	24.1858	+	.	ID=NCBI_GNO_89124;Parent=gene89124;flags=Start,Stop;tandy=td_s1c1g0;paralog=Omcl33,36;jgi=DappuDraft_119148;ltr_region=Gypsy_58
scaffold_611	NCBI_GNO	mRNA	7423	7641	19.3741	+	.	ID=NCBI_GNO_91124;Parent=gene91124;flags=Start,Stop;tandy=td_s1c1g0;ltr_region=Gypsy_58
scaffold_64	NCBI_GNO	mRNA	339238	346953	62.6602	-	.	ID=NCBI_GNO_340484;Parent=gene340484;flags=Start,Stop;tandy=td_s4c21g0;paralog=Omcl102,21;jgiov=DappuDraft_109281;tilex=3382;ltr_region=Gypsy_61
scaffold_64	NCBI_GNO	mRNA	348868	349311	38.037	-	.	ID=NCBI_GNO_342484;Parent=gene342484;flags=Start,Stop;tandy=td_s4c24g0;paralog=Omcl362,7;jgi=DappuDraft_324712;ltr_region=Gypsy_61
scaffold_64	NCBI_GNO	mRNA	627108	627485	17.0491	-	.	ID=NCBI_GNO_468484;Parent=gene468484;flags=Start,Stop;paralog=Omcl1,95;jgi=DappuDraft_252435;ltr_region=Gypsy_1
scaffold_64	NCBI_GNO	mRNA	632141	633002	41.85	-	.	ID=NCBI_GNO_470484;Parent=gene470484;flags=Start,Stop;paralog=Omcl3,90;jgi=DappuDraft_324781;ltr_region=Gypsy_1
scaffold_64	NCBI_GNO	mRNA	652215	652520	20.1356	-	.	ID=NCBI_GNO_476484;Parent=gene476484;flags=Start,Stop;jgi=DappuDraft_324784;tilex=2252;ltr_region=Bel_19
scaffold_64	NCBI_GNO	mRNA	652754	653056	18.3791	+	.	ID=NCBI_GNO_478484;Parent=gene478484;flags=Start,Stop;tandy=td_s4c57g0;paralog=Omcl2556,2;jgi=DappuDraft_324785;ltr_region=Bel_19
scaffold_64	NCBI_GNO	mRNA	653386	653536	22.8334	-	.	ID=NCBI_GNO_480484;Parent=gene480484;flags=Start,Stop;tilex=613;ltr_region=Bel_19
scaffold_64	NCBI_GNO	mRNA	655331	664222	99.2684	+	.	ID=NCBI_GNO_482484;Parent=gene482484;flags=Start,Stop;paralog=Omcl199,13;jgiov=DappuDraft_109333,DappuDraft_252443,DappuDraft_252444;tilex=1555;ltr_region=N220
scaffold_64	NCBI_GNO	mRNA	670688	671896	23.0529	-	.	ID=NCBI_GNO_486484;Parent=gene486484;flags=Start,Stop;tandy=td_s4c60g1;paralog=Omcl1,95;jgiov=DappuDraft_109336;tilex=869;ltr_region=Gypsy_11
scaffold_64	NCBI_GNO	mRNA	677578	681332	74.1061	-	.	ID=NCBI_GNO_488484;Parent=gene488484;flags=Start,Stop;tandy=td_s4c60g1;paralog=Omcl9,67;jgi=DappuDraft_109337,DappuDraft_252449;tilex=942;ltr_region=Gypsy_11
scaffold_64	NCBI_GNO	mRNA	742625	743176	16.4121	-	.	ID=NCBI_GNO_506484;Parent=gene506484;flags=Start,Stop;jgi=DappuDraft_324799;tilex=894;ltr_region=Gypsy_62
scaffold_645	NCBI_GNO	mRNA	6712	7081	31.8265	-	.	ID=NCBI_GNO_99134;Parent=gene99134;flags=Start,Stop;tilex=652;ltr_region=Copia_37
scaffold_645	NCBI_GNO	mRNA	12319	12570	19.1173	-	.	ID=NCBI_GNO_101134;Parent=gene101134;flags=Start,Stop;paralog=Omcl1359,2;jgi=DappuDraft_335494;ltr_region=Copia_37
scaffold_66	NCBI_GNO	mRNA	30703	39210	212.37	-	.	ID=NCBI_GNO_250494;Parent=gene250494;Dbxref=CAG32556.1,CAB63716.1,WFes0142078;flags=EST,Prot,Start,Stop,Frameshifts;protCDS=31070 34101;protein_hit=gi|53136454|emb|CAG32556.1|;pstop=32396 32398,32957 32959,32960 32962,32969 32971;tandy=td_s6c1g0;paralog=Omcl4,87;jgiov=DappuDraft_109456;Note=TBCD_CHICK/Q5ZI87/Gallus gallus/Tubulin-specific chaperone D,Tubulin-folding cofactor D,Beta-tubulin cofactor D;Ontology_term=Pfam:PF02985/HEAT;tilex=13658;est_group=inorganic:Fullerene_nanoparticle;ltr_region=Copia_42
scaffold_66	NCBI_GNO	mRNA	39856	42030	104.32	-	.	ID=NCBI_GNO_252494;Parent=gene252494;flags=Start,Stop;paralog=Omcl244,11;jgiov=DappuDraft_252633;tilex=3493;ltr_region=Copia_49
scaffold_66	NCBI_GNO	mRNA	126856	127167	15.1606	-	.	ID=NCBI_GNO_276494;Parent=gene276494;flags=Start,Stop;paralog=Omcl1,95;jgi=DappuDraft_324930;ltr_region=Gypsy_35
scaffold_66	NCBI_GNO	mRNA	127272	128573	39.7223	-	.	ID=NCBI_GNO_278494;Parent=gene278494;flags=Start,Stop;paralog=Omcl1,95;jgi=DappuDraft_324931;tilex=787;ltr_region=Gypsy_35
scaffold_66	NCBI_GNO	mRNA	140694	141329	23.431	+	.	ID=NCBI_GNO_280494;Parent=gene280494;flags=Start,Stop;tandy=td_s6c12g0;paralog=Omcl147,17;tilex=2057;modpr=WB:WBGene00009062;ltr_region=Gypsy_30
scaffold_66	NCBI_GNO	mRNA	321774	322163	22.549	-	.	ID=NCBI_GNO_346494;Parent=gene346494;flags=Start,Stop;paralog=Omcl1,95;jgi=DappuDraft_324966;tilex=3685;ltr_region=Gypsy_28
scaffold_66	NCBI_GNO	mRNA	322509	322835	16.3992	-	.	ID=NCBI_GNO_348494;Parent=gene348494;flags=Start,Stop;paralog=Omcl1,95;jgiov=DappuDraft_252701;tilex=2611;ltr_region=Gypsy_28
scaffold_66	NCBI_GNO	mRNA	331971	332312	22.995	+	.	ID=NCBI_GNO_350494;Parent=gene350494;flags=Start,Stop;jgi=DappuDraft_109505;tilex=564;ltr_region=Gypsy_28
scaffold_68	NCBI_GNO	mRNA	162663	163703	47.2923	-	.	ID=NCBI_GNO_366504;Parent=gene366504;flags=Start,Stop;tandy=td_s8c9g0;paralog=Omcl10,66;jgi=DappuDraft_325221;tilex=686;ltr_region=Bel_5
scaffold_69	NCBI_GNO	mRNA	300932	304766	34.971	+	.	ID=NCBI_GNO_86514;Parent=gene86514;flags=Start,Stop;tilex=1260;ltr_region=Bel_26
scaffold_69	NCBI_GNO	mRNA	304951	317539	77.2537	+	.	ID=NCBI_GNO_88514;Parent=gene88514;flags=Start,Stop;tandy=td_s9c10g0;paralog=Omcl377,7;jgiov=DappuDraft_109840,DappuDraft_109842,DappuDraft_253237;tilex=1891;ltr_region=Bel_26
scaffold_71	NCBI_GNO	mRNA	406547	418599	45.7877	+	.	ID=NCBI_GNO_82524;Parent=gene82524;flags=Start,Stop;tandy=td_s1c26g0;jgiov=DappuDraft_110092,DappuDraft_110093;tilex=14660;estov=WFes0150963;est_group=metal:High_mixed_metals;ltr_region=Copia_50
scaffold_726	NCBI_GNO	mRNA	6218	7644	74.1258	+	.	ID=NCBI_GNO_145154;Parent=gene145154;flags=Start,Stop;tandy=td_s6c1g15;paralog=Omcl10,66;jgi=DappuDraft_335779;tilex=708;modpr=MGI:1919933;ltr_region=Bel_12
scaffold_728	NCBI_GNO	mRNA	5062	5266	25.8027	+	.	ID=NCBI_GNO_155154;Parent=gene155154;flags=Start,Stop;tilex=851;ltr_region=Copia_51
scaffold_73	NCBI_GNO	mRNA	122488	123003	30.3868	-	.	ID=NCBI_GNO_46534;Parent=gene46534;flags=Start,Stop;tandy=td_s3c20g2;paralog=Omcl50,29;jgi=DappuDraft_325811;tilex=943;ltr_region=Copia_52
scaffold_73	NCBI_GNO	mRNA	223689	260666	41.4694	-	.	ID=NCBI_GNO_86534;Parent=gene86534;flags=Start,Stop;tandy=td_s3c36g0;jgiov=DappuDraft_110314,DappuDraft_253906,DappuDraft_253907,DappuDraft_253909,DappuDraft_253910,DappuDraft_34207;tilex=13220;ltr_region=Copia_15
scaffold_73	NCBI_GNO	mRNA	312166	312663	16.6874	-	.	ID=NCBI_GNO_116534;Parent=gene116534;flags=Start,Stop;jgi=DappuDraft_325847;tilex=702;ltr_region=Gypsy_63
scaffold_78	NCBI_GNO	mRNA	489504	490196	21.2887	+	.	ID=NCBI_GNO_380554;Parent=gene380554;flags=Start,Stop;paralog=Omcl629,5;jgiov=DappuDraft_110867;ltr_region=Gypsy_11
scaffold_79	NCBI_GNO	mRNA	390691	398911	143.691	+	.	ID=NCBI_GNO_166564;Parent=gene166564;Dbxref=CAA32025.1;flags=Prot,Start,Stop;protCDS=393343 395697;tandy=td_s9c46g0;paralog=Omcl139,17;jgiov=DappuDraft_110962,DappuDraft_254711;Note=POLX_TOBAC/P10978/Nicotiana tabacum/Retrovirus-related Pol polyprotein from transposon TNT 1-94,Protease,Reverse transcriptase,Endonuclease;Ontology_term=Pfam:PF00665/rve,Pfam:PF00077/RVP,Pfam:PF07727/RVT_2,Pfam:PF00098/zf-CCHC;tilex=4588;ltr_region=Copia_53
scaffold_79	NCBI_GNO	mRNA	401843	402190	16.7894	+	.	ID=NCBI_GNO_168564;Parent=gene168564;flags=Start,Stop;paralog=Omcl21,46;jgiov=DappuDraft_110963;tilex=724;ltr_region=Gypsy_16
scaffold_79	NCBI_GNO	mRNA	402308	402997	21.1454	+	.	ID=NCBI_GNO_170564;Parent=gene170564;flags=Start,Stop;paralog=Omcl21,46;jgiov=DappuDraft_110963;tilex=1421;ltr_region=Gypsy_16
scaffold_79	NCBI_GNO	mRNA	403704	405253	-4.99116	+	.	ID=NCBI_GNO_172564;Parent=gene172564;Dbxref=DAA04499.1,CAE05392.1;flags=Prot,Start,Stop;protCDS=403746 404495;protein_hit=gi|44829171|tpg|DAA04499.1|;paralog=Omcl52,29;Note=Q6IFU0_SCHMA/Q6IFU0/Schistosoma mansoni/Pol polyprotein;Ontology_term=GO:0004190/F:aspartic-type endopeptidase activity,GO:0003677/F:DNA binding,GO:0003723/F:RNA binding,GO:0003964/F:RNA-directed DNA polymerase activity,GO:0015074/P:DNA integration,GO:0006508/P:proteolysis,GO:0006278/P:RNA-dependent DNA replication,Pfam:PF00665/rve,Pfam:PF00077/RVP,Pfam:PF00078/RVT_1;tilex=1393;ltr_region=Gypsy_16
scaffold_79	NCBI_GNO	mRNA	410393	410746	17.7669	+	.	ID=NCBI_GNO_174564;Parent=gene174564;flags=Start,Stop;paralog=Omcl441,6;jgiov=DappuDraft_110964;tilex=554;ltr_region=Gypsy_16
scaffold_806	NCBI_GNO	mRNA	7312	7677	19.9773	+	.	ID=NCBI_GNO_5174;Parent=gene5174;flags=Start,Stop;tandy=td_s6c1g0;jgi=DappuDraft_335972;tilex=615;ltr_region=Bel_28
scaffold_82	NCBI_GNO	mRNA	68028	68531	22.2245	-	.	ID=NCBI_GNO_216574;Parent=gene216574;flags=Start,Stop;tandy=td_s2c5g1;paralog=Omcl2011,2;jgi=DappuDraft_111174;tilex=701;ltr_region=Bel_24
scaffold_82	NCBI_GNO	mRNA	229224	229634	21.7628	-	.	ID=NCBI_GNO_244574;Parent=gene244574;flags=Start,Stop;tandy=td_s2c26g3;paralog=Omcl21,46;jgiov=DappuDraft_111189;tilex=763;ltr_region=Gypsy_16
scaffold_82	NCBI_GNO	mRNA	231154	231789	31.2183	-	.	ID=NCBI_GNO_246574;Parent=gene246574;flags=Start,Stop;tandy=td_s2c26g3;paralog=Omcl21,46;jgi=DappuDraft_111190;tilex=2567;modpr=WB:WBGene00000698,WB:WBGene00000723,WB:WBGene00000736,WB:WBGene00001071;ltr_region=Gypsy_16
scaffold_84	NCBI_GNO	mRNA	171676	196677	61.1547	+	.	ID=NCBI_GNO_240584;Parent=gene240584;flags=Start,Stop;tandy=td_s4c12g0;paralog=Omcl170,15;jgiov=DappuDraft_255274,DappuDraft_255276;tilex=14190;ltr_region=Copia_42
scaffold_847	NCBI_GNO	mRNA	5412	5783	15.9018	+	.	ID=NCBI_GNO_205174;Parent=gene205174;flags=Start,Stop;paralog=Omcl1968,2;jgiov=DappuDraft_119626;tilex=1300;ltr_region=Gypsy_21
scaffold_847	NCBI_GNO	mRNA	6291	6752	16.1173	+	.	ID=NCBI_GNO_207174;Parent=gene207174;flags=Start,Stop;paralog=Omcl1153,3;jgiov=DappuDraft_119626;tilex=1062;ltr_region=Gypsy_21
scaffold_847	NCBI_GNO	mRNA	6803	7225	12.6272	+	.	ID=NCBI_GNO_209174;Parent=gene209174;flags=Start,Stop;paralog=Omcl1153,3;tilex=871;ltr_region=Gypsy_21
scaffold_847	NCBI_GNO	mRNA	7300	11079	64.3249	+	.	ID=NCBI_GNO_211174;Parent=gene211174;Dbxref=ABC94893.1;flags=Prot,Start,Stop;protCDS=8359 10434;tandy=td_s7c1g0;paralog=Omcl71,26;jgiov=DappuDraft_119627;Note=Q0ZLH4_9ORYZ/Q0ZLH4/Oryza australiensis/Polyprotein;Ontology_term=GO:0000785/C:chromatin,GO:0005634/C:nucleus,GO:0003682/F:chromatin binding,GO:0003677/F:DNA binding,GO:0003723/F:RNA binding,GO:0003964/F:RNA-directed DNA polymerase activity,GO:0008270/F:zinc ion binding,GO:0006333/P:chromatin assembly or disassembly,GO:0015074/P:DNA integration,GO:0006278/P:RNA-dependent DNA replication,Pfam:PF00385/Chromo,Pfam:PF03732/Retrotrans_gag,Pfam:PF00665/rve,Pfam:PF08284/RVP_2,Pfam:PF00078/RVT_1,Pfam:PF00098/zf-CCHC;tilex=956;modpr=MGI:107565;ltr_region=Gypsy_21
scaffold_877	NCBI_GNO	mRNA	4088	6838	-12.3705	-	.	ID=NCBI_GNO_93184;Parent=gene93184;Dbxref=CAA32025.1,AAF16534.1;flags=Prot,Start,Stop;protCDS=4148 6523;protein_hit=gi|20045|emb|CAA32025.1|;pstop=5231 5233;paralog=Omcl44,31;Note=POLX_TOBAC/P10978/Nicotiana tabacum/Retrovirus-related Pol polyprotein from transposon TNT 1-94,Protease,Reverse transcriptase,Endonuclease;Ontology_term=Pfam:PF00665/rve,Pfam:PF00077/RVP,Pfam:PF07727/RVT_2,Pfam:PF00098/zf-CCHC;tilex=1236;ltr_region=Copia_46
scaffold_877	NCBI_GNO	mRNA	7426	7716	16.265	-	.	ID=NCBI_GNO_95184;Parent=gene95184;flags=Start,Stop;jgi=DappuDraft_336150;tilex=713;ltr_region=Copia_46
scaffold_877	NCBI_GNO	mRNA	8290	8439	17.2014	-	.	ID=NCBI_GNO_97184;Parent=gene97184;flags=Start,Stop;jgi=DappuDraft_336151;ltr_region=Copia_46
scaffold_92	NCBI_GNO	mRNA	33533	38575	33.9206	-	.	ID=NCBI_GNO_442614;Parent=gene442614;Dbxref=BAA74713.1;flags=Prot,Start,Stop;protCDS=34928 37221;paralog=Omcl419,7;Note=O96968_BOMMO/O96968/Bombyx mori/Yokozuna protein;Ontology_term=GO:0003677/F:DNA binding,GO:0016787/F:hydrolase activity,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00665/rve,Pfam:PF07727/RVT_2,Pfam:PF00098/zf-CCHC;tilex=10128;ltr_region=Copia_10
scaffold_92	NCBI_GNO	mRNA	101526	101924	25.4575	-	.	ID=NCBI_GNO_466614;Parent=gene466614;flags=Start,Stop;jgiov=DappuDraft_256239;tilex=694;ltr_region=Gypsy_40
scaffold_92	NCBI_GNO	mRNA	105424	105828	20.4622	-	.	ID=NCBI_GNO_468614;Parent=gene468614;flags=Start,Stop;jgi=DappuDraft_112135;tilex=1022;ltr_region=Gypsy_40
scaffold_92	NCBI_GNO	mRNA	106256	106552	23.0754	-	.	ID=NCBI_GNO_470614;Parent=gene470614;flags=Start,Stop;jgiov=DappuDraft_256243;tilex=711;ltr_region=Gypsy_40
scaffold_92	NCBI_GNO	mRNA	176489	183663	80.4746	+	.	ID=NCBI_GNO_480614;Parent=gene480614;flags=Start,Stop;paralog=Omcl48,29;jgiov=DappuDraft_256263;tilex=14223;ltr_region=Gypsy_65
scaffold_92	NCBI_GNO	mRNA	211546	231754	111	-	.	ID=NCBI_GNO_492614;Parent=gene492614;flags=Start,Stop;tandy=td_s2c25g1;paralog=Omcl48,29;jgiov=DappuDraft_112149,DappuDraft_112150;tilex=1908;ltr_region=Gypsy_2,Gypsy_32
scaffold_92	NCBI_GNO	mRNA	235725	236057	17.0065	+	.	ID=NCBI_GNO_494614;Parent=gene494614;flags=Start,Stop;tandy=td_s2c28g2;jgiov=DappuDraft_112150;tilex=1337;ltr_region=Gypsy_32
scaffold_92	NCBI_GNO	mRNA	236417	236784	27.8935	-	.	ID=NCBI_GNO_496614;Parent=gene496614;flags=Start,Stop;tandy=td_s2c28g2;jgiov=DappuDraft_112150;tilex=655;ltr_region=Gypsy_32
scaffold_92	NCBI_GNO	mRNA	237298	237693	25.8272	-	.	ID=NCBI_GNO_498614;Parent=gene498614;flags=Start,Stop;tandy=td_s2c28g3;jgiov=DappuDraft_112150;tilex=627;ltr_region=Gypsy_32
scaffold_92	NCBI_GNO	mRNA	259200	259821	34.619	-	.	ID=NCBI_GNO_508614;Parent=gene508614;flags=Start,Stop;paralog=Omcl2521,2;tilex=656;ltr_region=Copia_28
scaffold_92	NCBI_GNO	mRNA	478340	481929	-2.37962	-	.	ID=NCBI_GNO_558614;Parent=gene558614;Dbxref=AAN87269.1;flags=Prot,Start,Stop;protCDS=478748 481920;tandy=td_s2c45g0;paralog=Omcl167,15;jgiov=DappuDraft_112183;Note=Q8I7Q1_DROME/Q8I7Q1/Drosophila melanogaster/ORF;Ontology_term=GO:0004190/F:aspartic-type endopeptidase activity,GO:0003677/F:DNA binding,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,GO:0006508/P:proteolysis,Pfam:PF03564/DUF1759,Pfam:PF05380/Peptidase_A17,Pfam:PF00665/rve,Pfam:PF09337/zf-H2C2;tilex=598;modpr=WB:WBGene00019447;ltr_region=Bel_17
scaffold_92	NCBI_GNO	mRNA	483383	485220	36.9332	-	.	ID=NCBI_GNO_560614;Parent=gene560614;flags=Start,Stop;tandy=td_s2c46g0;paralog=Omcl167,15;jgiov=DappuDraft_112184;tilex=1220;ltr_region=Bel_17
scaffold_92	NCBI_GNO	mRNA	485627	487427	85.6253	-	.	ID=NCBI_GNO_562614;Parent=gene562614;flags=Start,Stop;tandy=td_s2c45g1;paralog=Omcl187,14;jgiov=DappuDraft_256358;tilex=749;ltr_region=Bel_17
scaffold_92	NCBI_GNO	mRNA	488120	488830	26.5704	-	.	ID=NCBI_GNO_564614;Parent=gene564614;flags=Start,Stop;tandy=td_s2c45g2;paralog=Omcl167,15;jgi=DappuDraft_327612;ltr_region=Bel_17
scaffold_93	NCBI_GNO	mRNA	401718	409924	109.683	-	.	ID=NCBI_GNO_136624;Parent=gene136624;flags=Start,Stop;tandy=td_s3c29g0;paralog=Omcl44,31;jgi=DappuDraft_327683;tilex=611;estov=WFes0152919,WFes0152920;est_group=metal:Low_mixed_metals;ltr_region=Copia_9
scaffold_93	NCBI_GNO	mRNA	410234	431319	137.715	-	.	ID=NCBI_GNO_138624;Parent=gene138624;flags=Start,Stop;tandy=td_s3c29g2;paralog=Omcl214,12;jgiov=DappuDraft_112255,DappuDraft_256453;tilex=2663;ltr_region=Copia_9
scaffold_94	NCBI_GNO	mRNA	280487	287851	172.436	+	.	ID=NCBI_GNO_242624;Parent=gene242624;flags=Start,Stop;tandy=td_s4c13g0;paralog=Omcl408,7;jgiov=DappuDraft_112291,DappuDraft_256526,DappuDraft_327730;tilex=5418;estov=WFes0103985;est_group=normal:Females-adult;ltr_region=Gypsy_3
scaffold_95	NCBI_GNO	mRNA	99782	137579	190.086	-	.	ID=NCBI_GNO_348624;Parent=gene348624;flags=Start,Stop;tandy=td_s5c10g1;paralog=Omcl87,23;jgiov=DappuDraft_112346,DappuDraft_256607,DappuDraft_256613,DappuDraft_256614;tilex=6080;estov=WFes0125825,WFes0125826;est_group=inorganic:Acid_stress;ltr_region=Copia_54
scaffold_96	NCBI_GNO	mRNA	59820	64686	65.7388	+	.	ID=NCBI_GNO_26634;Parent=gene26634;flags=Start,Stop;tandy=td_s6c14g2;paralog=Omcl102,21;jgiov=DappuDraft_256719;tilex=752;ltr_region=Gypsy_6
scaffold_96	NCBI_GNO	mRNA	64848	66411	40.9081	-	.	ID=NCBI_GNO_28634;Parent=gene28634;flags=Start,Stop;tandy=td_s6c7g2;jgi=DappuDraft_327838;ltr_region=Gypsy_6
scaffold_96	NCBI_GNO	mRNA	129391	133036	56.841	+	.	ID=NCBI_GNO_58634;Parent=gene58634;Dbxref=EAT47793.1,NP_001020262.1,NP_001081.1,NP_038882.1,NP_506192.1,NP_572736.1,NP_649129.1;flags=Prot,Start,Stop,Frameshifts;protCDS=129463 133003;protein_hit=gi|108883568|gb|EAT47793.1|;pstop=129867 129869,129921 129923,130257 130259;tandy=td_s6c24g0;paralog=Omcl494,6;jgiov=DappuDraft_112418,DappuDraft_256742;Note=Q17M52_AEDAE/Q17M52/Aedes aegypti/ATP-dependent transporter;Ontology_term=GO:0005524/F:ATP binding,GO:0016887/F:ATPase activity,Pfam:PF00005/ABC_tran;tilex=4422;ltr_region=Gypsy_28
scaffold_96	NCBI_GNO	mRNA	133110	136579	55.9479	+	.	ID=NCBI_GNO_60634;Parent=gene60634;flags=Start,Stop;paralog=Omcl9,67;jgiov=DappuDraft_309312;tilex=1036;estov=WFes0105724,WFes0105725;est_group=normal:Males-adult;ltr_region=Gypsy_28
scaffold_96	NCBI_GNO	mRNA	141251	142545	49.7861	+	.	ID=NCBI_GNO_62634;Parent=gene62634;flags=Start,Stop;paralog=Omcl1,95;jgiov=DappuDraft_112420;ltr_region=Gypsy_28
scaffold_96	NCBI_GNO	mRNA	142930	149798	96.7311	-	.	ID=NCBI_GNO_64634;Parent=gene64634;flags=Start,Stop;tandy=td_s6c24g2;paralog=Omcl2533,2;jgiov=DappuDraft_112421,DappuDraft_256746;tilex=15738;estov=WFes0152326,WFes0152327;est_group=metal:High_mixed_metals;ltr_region=Gypsy_28
scaffold_98	NCBI_GNO	mRNA	369129	371863	52.8867	+	.	ID=NCBI_GNO_500634;Parent=gene500634;Dbxref=NP_001045293.1;flags=Prot,Start,Stop;protCDS=369168 371621;protein_hit=gi|115442027|ref|NP_001045293.1|;paralog=Omcl44,31;Note=Q0JGC1_ORYSJ/Q0JGC1/Oryza sativa subsp. japonica/Os01g0931000 protein;Ontology_term=GO:0003677/F:DNA binding,GO:0016491/F:oxidoreductase activity,GO:0008270/F:zinc ion binding,GO:0015074/P:DNA integration,Pfam:PF00106/adh_short,Pfam:PF00665/rve,Pfam:PF07727/RVT_2,Pfam:PF00098/zf-CCHC;ltr_region=Copia_21