Model Organism Database Standard URLs
wFleaBase Genome Data Sets

      Name                    Last modified       Size  Description

[DIR] Parent Directory 02-Apr-2010 10:07 - [DIR] Daphnia_pulicaria/ 27-May-2010 14:32 - [DIR] Daphnia_pulex/ 19-Jul-2007 17:33 - [DIR] Daphnia_magna/ 19-Jul-2007 17:19 -

In order to simplify the retrieval of common datasets, the Generic Model Organisms Database (GMOD) community has implemented a series of standard URLs. Each MOD {will/should} have an index page like this one describing the species and datasets that are available. Read more about the GMOD project at www.gmod.org.

Use below links to choose among Sequence (FastA), Features (GFF), Summary tables and other bulk genome data. Select among species, feature type, chromosomes, data release versions.

Available URLs

/genome Display this HTML-formatted index page that contains links to each of the species available through common URLs.
/genome/Binomial_name
/genome/Daphnia_pulex/
An index page for species "Binomial_name". This will be an HTML-format page containing links to each of the genome releases.
/genome/Binomial_name/release Leads to index for the named release. It should be an HTML-format page containing links to each of the data sets described below.
/genome/Binomial_name/current Leads to an index of the most current release, symbolic link style.
/genome/Binomial_name/current/dna
/genome/Daphnia_pulex/current/dna
Returns a FASTA file containing big DNA fragments (e.g. chromosomes). MIME type is application/x-fasta.
/genome/Binomial_name/current/mrna
/genome/Daphnia_pulex/current/mrna
Returns a FASTA file containing spliced mRNA transcript sequences. MIME type is application/x-fasta.
/genome/Binomial_name/current/ncrna
/genome/Daphnia_pulex/current/ncrna
Returns a FASTA file containing non-coding RNA sequences. MIME type is application/x-fasta.
/genome/Binomial_name/current/protein
/genome/Daphnia_pulex/current/protein
Returns a FASTA file containing all the protein sequences known to be encoded by the genome. MIME type is application/x-fasta
/genome/Binomial_name/current/feature
/genome/Daphnia_pulex/current/feature
Returns a GFF3 file describing genome annotations. MIME type is application/x-gff3.