Gene Structure Transcriptome Tile Expression

Gene structure signals from EST-validated gene models in Daphnia pulex and Drosophila melanogaster, showing standard expression scores (as deviation t-statistic from signal boundary), and G+C sequence content. Expression is from Nimblegen measurements for Daphnia and Drosophila, and Solexa measurement for Drosophila. Sample size is approx. 4,000 genes for each structure and species.

See also Notes and statistics on base level expression
Don Gilbert, 2009 March, gilbertd At indiana.edu

Daphnia	Drosophila
(A) UTR5 Transcription start site (TSS) with preceding TATA-box at position -30
		New 0905
(B) Intron - Exon boundary at 3-prime end, with AG signal at position -2 Exon saw-tooth in GC% is due to codon position-3 synonymous T substitutions
		New 0905
(C) UTR3 Transcription end site with preceding poly-AAA at position -20
		New 0905

 Name                                 Last modified       Size  Description

 Parent Directory                     07-Mar-2009 13:18      -  
 daphnia-utr5-express100.pdf          28-Feb-2009 17:46    17k  
 daphnia-utr5-express1k.pdf           28-Feb-2009 17:46    68k  
 daphnia-utr5-xrawqnorm1k.pdf         28-Feb-2009 21:13    44k  
 daphnia_gest/                        24-Oct-2009 15:12      -  
 drosmel_gest/                        24-Oct-2009 15:11      -  
 gene_struct_tile_expression.html     10-Nov-2009 10:34     3k  
 pasa_daphj_in3.xraw200gc.pdf         05-Mar-2009 16:16    12k  
 pasa_daphj_in3.xraw70gc.pdf          05-Mar-2009 16:21     8k  
 pasa_daphj_in3.xraw70gc.png          07-Mar-2009 12:42    86k  
 pasa_daphj_in5.xraw200gc.pdf         05-Mar-2009 16:27    12k  
 pasa_daphj_in5.xraw70gc.pdf          05-Mar-2009 16:26     8k  
 pasa_daphj_utr3.xraw70gc.pdf         05-Mar-2009 15:36     7k  
 pasa_daphj_utr3.xrawqnorm1gc.pdf     05-Mar-2009 14:53    15k  
 pasa_daphj_utr3.xrawqnorm1gc.png     07-Mar-2009 12:03    90k  
 pasa_daphj_utr3.xrawqnorm70gc.pdf    05-Mar-2009 14:57     8k  
 pasa_daphj_utr5.xraw200gc.pdf        05-Mar-2009 15:44    13k  
 pasa_daphj_utr5.xraw200gc.png        07-Mar-2009 11:43    81k  
 pasa_daphj_utr5.xraw70gc.pdf         05-Mar-2009 15:43     8k  
 pasa_daphj_utr5.xrawqnorm1gc.pdf     01-Mar-2009 16:29    16k  
 pasa_dmel_intron3b.xnimslx.pdf       02-Mar-2009 16:51    37k  
 pasa_dmel_intron3b.xnimslx200gc.pdf  06-Mar-2009 14:34    36k  
 pasa_dmel_intron3b.xnimslx70gc.pdf   06-Mar-2009 14:34    16k  
 pasa_dmel_intron3e.x2nimslx200gc.pdf 06-Mar-2009 17:42    14k  
 pasa_dmel_intron3e.x2nimslx70gc.pdf  06-Mar-2009 17:41     8k  
 pasa_dmel_intron3e.x2nimslx70gc.png  07-Mar-2009 12:42    99k  
 pasa_dmel_intron3e.xnimslx200gc.pdf  06-Mar-2009 12:56    44k  
 pasa_dmel_intron3e.xnimslx70gc.pdf   06-Mar-2009 13:05    19k  
 pasa_dmel_intron3e.xnimslxaf52.pdf   02-Mar-2009 19:51    46k  
 pasa_dmel_intron3ex4nsr100gc.pdf     30-Apr-2009 15:23    12k  
 pasa_dmel_intron3ex4nsr100gc.png     30-Apr-2009 15:54   118k  
 pasa_dmel_intron3ex4nsr40gc.pdf      30-Apr-2009 15:22     9k  
 pasa_dmel_urt3x4nsr100gc.pdf         30-Apr-2009 15:48    12k  
 pasa_dmel_urt3x4nsr100gc.png         30-Apr-2009 15:53   110k  
 pasa_dmel_urt3x4nsr40gc.pdf          30-Apr-2009 15:50     9k  
 pasa_dmel_urt5x4nsr200gc.pdf         01-May-2009 15:30    19k  
 pasa_dmel_urt5x4nsr200gc.png         01-May-2009 15:30   112k  
 pasa_dmel_urt5x4nsr60gc.pdf          01-May-2009 15:27    10k  
 pasa_dmel_utr3.x2nimslx200gc.pdf     06-Mar-2009 17:13    15k  
 pasa_dmel_utr3.x2nimslx200gc.png     07-Mar-2009 11:46   103k  
 pasa_dmel_utr3.x2nimslx70gc.pdf      06-Mar-2009 17:18     8k  
 pasa_dmel_utr5.x2nimslx200gc.pdf     06-Mar-2009 17:56    15k  
 pasa_dmel_utr5.x2nimslx200gc.png     07-Mar-2009 11:44    99k  
 pasa_dmel_utr5.x2nimslx70gc.pdf      06-Mar-2009 17:56     8k  
 pasa_dmel_utr5.xnimslx1gc.pdf        01-Mar-2009 18:50    37k  
 rgaspdg/                             16-Sep-2009 15:54      -  
 rgaspdg2/                            30-Nov-2009 23:45      -  
 ribosome-struct/                     21-Mar-2009 21:25      -