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Daphnia and related species genome gene averages

This is a chart of species genome-wide averages of D. melanogaster protein matches, showing protein similarity, alignment length, HSP count (an estimate of exons), gap size (an estimate of introns), duplicate gene (paralog) count, and distance to duplicate (tandem gene duplication distance).

Three non-Drosophila genomes ( C. elegans:cele, crustacean Daphnia: dpulex, and insect Anopholes:agam) are included, and have obvious differences from Drosophila (Dmel to Dgri). These statistics are based on found genes, those query proteins which matched in genomes with <= 1e-3 probability. See also charts showing counts of found genes, for nine MOD proteomes and for Dmel proteome. See also this PDF view of genome averages.


Figures show genome averages for matches to Drosophila melanogaster proteome measured with tBLASTn, with 95% confidence intervals. Species include three outgroups at left (cele,dpulex,agam), and twelve Drosophila species, Dmel .. Dgri, for CAF1 assemblies with two alternates (dpse2r, dyak3r).

Don Gilbert, April 2006